Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq61270 178 2e-39 >seq61270 Length=8000 Score = 178 bits (196), Expect = 2e-39 Identities = 281/395 (71%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 146929 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGG 146988 |||||||| ||||| || || |||||||||| || | ||||||||| |||||||| Sbjct 7596 ACGTGGTTATTATAGACATGGGCATCCCCCAGGGAATGTATAAAGTCCCCTGGCTTAAGA 7537 Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 || ||||| ||||||| |||| ||| || || | |||||||| ||||| || || || Sbjct 7536 CCCGTCACATGGGCCATCATGATGGTTAGAAGGGCATAGCTGGCAATGTTAAATGGTACA 7477 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108 || || ||||| || | || | ||| |||| ||||| || |||||||||| ||||| Sbjct 7476 CCAAGACCCATATCAGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCCGTTCGCCACA 7417 Query 147109 TAAAACTGGCACAGGAT-GTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTT 147167 || ||||| ||| || ||||||||| |||| ||||| | || || | ||| Sbjct 7416 TAGAACTGT-ACAAGACAGTGGCACGGAGGCAAGGCCATTAAATGAAGATCTCTCGCGTT 7358 Query 147168 CCAGGCCGAGACCACCAGCCGCCTGCTC-TCGGGGTTCCTCTTAATCTCTTCGATAACCC 147226 ||| || | | ||||| || | | || || || || |||||||| || |||||| Sbjct 7357 CCAAGCACACATCACCATACGAC-GATCGTCCGGATTACTCTTAATGGTCTCAATAACCT 7299 Query 147227 ACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCA-CGTACCTGGCC 147285 || ||||| ||||| |||| || |||||| || | ||| | | ||| || Sbjct 7298 TCCCAAGCTGATCCACACCCTTCCCAGCGTAGTCTG-CATGCATGGTATCATACTCCGCG 7240 Query 147286 CCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCC 147320 |||||||||||||| || || || || || ||||| Sbjct 7239 CCAAAGTGCCTCCATTGAAACCCATAGACCGGCCC 7205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581382950342400