Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq28030 138 2e-26 seq30401 120 4e-21 seq182767 98.7 1e-14 seq71246 96.9 5e-14 >seq28030 Length=5412 Score = 138 bits (152), Expect = 2e-26 Identities = 377/569 (66%), Gaps = 14/569 (2%) Strand=Plus/Minus Query 1455714 GCGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||| || || || | || ||||| | ||||||||| | | ||||||| |||| Sbjct 2159 GCGAACCTCTCCTACAGGAGAACCCACAACGCTTTGTCGTCCTTCCCATCCAATACCCAG 2100 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 || ||| | |||||| |||||| ||| ||| ||| ||||| | ||| ||||| || Sbjct 2099 ACATCTGGAACATGTACAAAAAAG-CCGTTGCCAGCTTCTGGACGGTCGAAGAGGTGGAT 2041 Query 1455834 CTCGGCGCCGACACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATC 1455890 ||| || || || | | |||| || ||| ||||| ||||| ||||||| Sbjct 2040 CTCAGCAAGGATACCCTAGATTGGGAAGAGCGTCTGAATGACGAAGAGCGTTATTTCATA 1981 Query 1455891 AAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGG 1455950 || ||||| |||||||| ||| || || || ||||| |||||| | | || Sbjct 1980 TCTCATGTCCTTGCCTTTTT-CGCTGCATCTGACGGAATCGTTAATGAGAACATCGTCGA 1922 Query 1455951 CCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGC 1456010 || || | ||||||||| | | || || || | || || || || ||| |||| Sbjct 1921 GCGTTTCACCGCTGAGGTCCAAGTTACTGAAGCGCGATGCTTCTATGGCTTTCAGGTCGC 1862 Query 1456011 CATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||||||| |||||||||| ||||| | || || |||||||| ||||||| Sbjct 1861 CATCGAAAACATTCACTCTGAAATGTACTCATTACTCATTGACACCTATATCAAGGATAA 1802 Query 1456071 GGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGC 1456130 | || |||| | ||||||| |||| | |||| | || | | || ||||| Sbjct 1801 AGAGGAAAAGGGTCGCCTCTTTAACGCCCTGGACAACTTCCCTGCTATTCAAAAGAAGGC 1742 Query 1456131 CGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC--ACTTTGCCGAGCGGCTCG 1456188 | ||||| |||||| || | |||| | ||||| ||||| || Sbjct 1741 TGCTTGGGCTCAAAAGTGG----ACGCAGTCTACCTCTGCTTCCTTTGGAGAGCGAATCA 1686 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGG 1456246 | | ||||| | ||| || || || || ||||| || || ||| |||| || ||| Sbjct 1685 TAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCTT-TGCTTCCATTTTCTGG 1627 Query 1456247 CTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||| || |||||||| || || Sbjct 1626 CTGAAGAAGCGTGGACTCATGCCTGGGCT 1598 >seq30401 Length=510 Score = 120 bits (132), Expect = 4e-21 Identities = 131/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||||||||| |||| || |||| | ||||| | Sbjct 3 CCATGAGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGGATCGCCGCCGAGTCTT 62 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||| || | || ||||||| | ||| ||| | | | || ||||||||||||| Sbjct 63 CTCGCCTCGCCCACTACAACAAGTGGTCCACCATCACCTCCTGGGAAATCCAGACCGCCG 122 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || || | | ||| ||||| |||| |||||||||||||||||| |||| Sbjct 123 TCTGACTCCTCCTCCCCGGAGAACTCGCCAAGCACGCCGTCTCCGAGGGAACCA 176 >seq182767 Length=2084 Score = 98.7 bits (108), Expect = 1e-14 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 262917 TGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCT 262976 |||||| |||||||| | ||| |||||| ||||||||||||| | ||| | || ||||| Sbjct 1551 TGGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAAATCCT 1610 Query 262977 GGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTC 263036 ||| |||| ||||| |||||| | ||| |||||||||| | || || || ||||| Sbjct 1611 GGGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTCCTCTC 1670 Query 263037 GGGCGACTT 263045 || || || Sbjct 1671 TGGGGAGTT 1679 >seq71246 Length=1158 Score = 96.9 bits (106), Expect = 5e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTC 724969 ||| |||||||| | |||||||| |||||| ||| | | | | || ||||| | | Sbjct 1134 TATTTACAAGGTCATGAAGCAGGTCCACCCCGAAACGG--GAGTC-TCTTCCAA---GGC 1081 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 |||| ||||||||||| |||||||| ||||| |||| || ||| | | ||| Sbjct 1080 CATGAGCATCATGAACTCCTTTGTCAATGACATCTTCGAGCGGATCACCGCAGAGTATTC 1021 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 || || |||| || || |||| | ||| ||| | || || || || || || || Sbjct 1020 CCGACTTGCGCACTACAGCAAGTGTTCCACCATCACTTCCCGGGAAATTCAAACTGCTGT 961 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || ||| || |||||||||| |||||||||||| ||||| |||| Sbjct 960 CAGGTTGCTCCTGCCTGGTGAACTGGCCAAGCACGCCGTCTCTGAGGGAACCA 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7149973656323792