Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq11950 120 3e-22 seq78081 82.4 7e-11 >seq11950 Length=2906 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 || ||||| || || ||| |||||||||||||| || | ||||||||| | || || Sbjct 1097 ACTAAATGCAAAGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCA 1038 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || ||||| || || || ||||| ||||||||||| | |||| | |||||||| Sbjct 1037 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGA 978 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | || | | |||||| | || ||||| | ||||| || || Sbjct 977 ATCTTAGTCTTCACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTC 918 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | |||||| ||||| |||||||||| Sbjct 917 CCGGTAAGAGTTTTAACAAAGATCTGCATTC 887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | ||| | || | ||| | ||| ||||||||||| || ||||| | Sbjct 661 TTCCACCTCGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAG 602 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||| || |||| || |||||||| || || || || | |||||||| || | | Sbjct 601 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 542 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||||||||| ||||| ||| | | | | ||||| | || | Sbjct 541 GAATTCCCTCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAA 482 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| | ||||| ||||| || || | ||| || || || || ||||||| Sbjct 481 CCTCTAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATTC 431 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || | || |||| ||||| || | ||| ||||||||||||||| || |||| Sbjct 889 TTCCTCCTCTCAATCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGG 830 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 || ||| || |||| || |||||||| || || || || | |||||||| || | | Sbjct 829 ACAGGGTGCGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGG 770 Query 35628 GAACGCTCTCCTTGTC 35643 ||| | ||||||||| Sbjct 769 GAATTCCCTCCTTGTC 754 >seq78081 Length=4256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||||||||| || | | |||||| | || || |||||||| || ||||| ||| Sbjct 2977 TTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGATC 3036 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 || ||||| || || | ||| | | |||||| || ||| || ||| | | || | Sbjct 3037 AAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGATTTTGGTCTTAACATTTTCG 3096 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | || || ||||||||||| | || || || || Sbjct 3097 ATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACGAAA 3156 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 3157 ATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449167271929280