Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq147988 98.7 1e-15 >seq147988 Length=4520 Score = 98.7 bits (108), Expect = 1e-15 Identities = 234/349 (67%), Gaps = 6/349 (2%) Strand=Plus/Minus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 |||| |||||||| || ||||||||||| ||| || ||| || ||||| |||| Sbjct 2231 TCTATCAGGCATCTACTTCAGAGTTGTATGGAAAGGTTCAGGAGGTTCCTCAGAAGGAAA 2172 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 | || ||||| || || || ||| |||||||| || || ||||||| || ||| | Sbjct 2171 CGACGCCTTTTTATCCTCGTAGTCCCTATGGCGTGGCCAAGCTCTATGCCTACTGGTCCG 2112 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | | |||| | | ||| |||| ||| ||| ||| ||| || || || ||||||| Sbjct 2111 TGATTAACTTCCGGGAGGCCTATGATATGTTTGCCTGTAATGGGATCCTCTTTAACCATG 2052 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTAT--CCCG 161550 || ||||| | || |||| || || || | |||||||| | | || | || Sbjct 2051 AGAGTCCACGGAGAGGAGAGAACTTTGTCACGAGGAAGATTAC--GCGCTCTGTTGCCAA 1994 Query 161551 TATT-AGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATT 161609 ||| ||| || || | ||||| | | || || || | |||| | || |||| Sbjct 1993 GATTCAGT-TGGGGCTCCTAGATTGCTTTGAACTTGGAAACTTGGACTCCAAGCGTGATT 1935 Query 161610 GGGGTCATGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACA 161658 |||| ||||| | |||||||| | | |||||| | ||||| || || Sbjct 1934 GGGGACATGCCAAGGACTATGTACAAGGAATGTGGCTCATGTTGCAGCA 1886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 727296232982080