Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq285389 84.2 3e-11 >seq285389 Length=790 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 ||||| |||||||||||| || | || || || ||||| ||||| |||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 ||||| | ||||| || ||||| |||||||| |||| ||| ||||| || |||| Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | | |||||| | || || |||| ||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTA 39527 || || | | || ||||||| || |||| Sbjct 759 CCAATTAAACTTACCGGTAGAGATTCTGTTA 789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684430639122240