Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027345.1 Length=73008 Score E Sequences producing significant alignments: (Bits) Value seq121188 125 3e-24 >seq121188 Length=15723 Score = 125 bits (138), Expect = 3e-24 Identities = 350/531 (66%), Gaps = 6/531 (1%) Strand=Plus/Plus Query 68152 TTCGCAGAGGTAGCGAAGTCAGTGGTGATGTAGAAGTTGTACCGCTTCTTGTTGTCCAGT 68211 |||| || || || |||||||||||||||||||| || || ||||||||| | || Sbjct 721 TTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGG 780 Query 68212 ACGTTGCGCCGCATGTACCAAGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGAC 68271 | || ||| | ||||| | | ||||| ||||| | | ||| || || | Sbjct 781 ATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCATCC 840 Query 68272 ATGATCTGGAGCATAAGCTCCTGGTTGAATGTCTCGATCTTCCCTGCCTTCTTGGCCAGG 68331 ||| | |||||||||||||| ||| | ||| | || ||| | |||| | | Sbjct 841 TGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGAAGAAG 900 Query 68332 GTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGCCCAAGCACCCCTGAACTCT 68391 ||| | || || ||||||||| || || || | ||| || ||| || Sbjct 901 TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCC 960 Query 68392 TCCCGTGAGCA-CGGGAATCTC-TCGCACACAGGGTAGACGTTGACCTTCCAGGCACCAG 68449 | | | | || | |||| ||| | ||||| || | ||||| |||| ||| ||||||| Sbjct 961 TTC--TTATCAACAGGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAG 1018 Query 68450 ACTCCACTGCTTTGTACAGTGGATCCTTCGCGTTGAACGGTGTACCCGACCAG-ATGATC 68508 |||| | ||||| |||| || ||| || ||| || || ||| ||| || || Sbjct 1019 ACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGT-CCCATTCAGAATAGTC 1077 Query 68509 ATGTTCTTCTTCGGGTGCAGTGCGTAGTCCACTGCCTTGTACACCGTGTCTTCGATGGCT 68568 | ||| | ||||| || |||| || | ||||||| || || || | || Sbjct 1078 TTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTTC 1137 Query 68569 GCGATGACGGTTGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGCAAGC 68628 || || | ||||| || |||||||| || || | ||||||||| || || |||||| Sbjct 1138 GCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGC 1197 Query 68629 TGCGGTCGCTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACCG 68679 ||||| ||||| | ||||| |||||||| ||||| |||||||||| Sbjct 1198 GAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232679459184744