Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027348.2 Length=73882 Score E Sequences producing significant alignments: (Bits) Value seq76541 188 3e-43 seq266624 161 5e-35 seq282581 98.7 5e-16 >seq76541 Length=11138 Score = 188 bits (208), Expect = 3e-43 Identities = 278/391 (71%), Gaps = 2/391 (1%) Strand=Plus/Minus Query 26280 GTGCTGATTTATCAGCTGTTCATGAAGGACATTCTGGACACCACCGGGC-TGCTCGACGG 26338 ||||||||||||||| |||| ||| | |||| || ||| | | ||| ||||||| || Sbjct 683 GTGCTGATTTATCAGTTGTTTATGGATCACATCCTTGAC-CAAGAGGGAATGCTCGAAGG 625 Query 26339 CATGGCCACGCTGCTTGCCAGCTGGCACTGCACGATGCTCATCACGTACCTGGCCACCAA 26398 ||| || || || |||| | || || |||||||||||| ||||||||||| Sbjct 624 TCTGGAAGTCCTCCTACGCAACTGGGAATGTACACAGCTCATCACGTATCTGGCCACCAA 565 Query 26399 CACCTGCGCCGGGAACAAGCTGGGCCTCAAGGACCAGGCTCAGGAGTACAGCGGCAACTG 26458 | || || || ||| || |||| || |||| ||||||||||||| | || |||| Sbjct 564 TTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAGGAGTTCGCAGGAAACTA 505 Query 26459 GGCGGTGGATGAGATCAAGGACATTACTCGGATCCGGCTGCCGGACCTGCTCCAGTACAA 26518 || || || || ||| | ||||| || | ||||| ||||| | || | | ||||| Sbjct 504 TGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCAAAGCTCTTGGAATACAA 445 Query 26519 CCTGGTGGACGGCATCTCCGCCTGGTACGTGTTCGACAAGAACTACCCCAAGATGGTGGC 26578 ||| ||||| ||| | || | ||||| || | | | || | | ||| |||||| || Sbjct 444 CCTCGTGGATGGCCTATCTACTTGGTATGTCTACAATAAACATCATTCCACGATGGTCGC 385 Query 26579 CGACGAGCAGGAAGAGGTCTACACCGGCCTGTTCCGCAAGGCTACCATCGACATCATCCA 26638 ||||| |||||| | ||||| | |||||| |||||| ||||||||||| || Sbjct 384 AGACGATCAGGAATACATCTACGTTGAGCTGTTCAAAAAGGCTGTGATCGACATCATTCA 325 Query 26639 GATGCAGCTGACCGGCATGCCGATCAACATG 26669 |||||| |||| || ||||| ||||||||| Sbjct 324 AATGCAGTTGACGGGTATGCCCATCAACATG 294 >seq266624 Length=731 Score = 161 bits (178), Expect = 5e-35 Identities = 244/345 (71%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 60114 GGCAGTCGAGATATCCACCTTCAGGTGGAACTGGCCCACCAGGTCTTCCTTGGAGATTTC 60173 ||| || |||||||| |||||||||| || | || ||| || |||||||| Sbjct 265 GGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAGCCAACTCAGAACGAGAGATTTC 324 Query 60174 CACGAACTCTTCATTCGTGACCTGCACCACTTCCTTGGCGTCCAGGAACTCCTTGTTCAT 60233 || |||||||| || || | | || ||||||| | |||| ||||| ||||| Sbjct 325 AACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTCCAAGAACTGAGCATTCAT 384 Query 60234 GGCGATGATCTTGGCAGCGATCTCCTTCATGCCTTCAGCCAGCCGGCGCAGGATCGTCAT 60293 ||||||||||| || |||||| || ||| |||| ||||| || || | || |||| Sbjct 385 TGCGATGATCTTCTCACCGATCTTCTGCATACCTTTGGCCAGACGACGAACAATGCTCAT 444 Query 60294 CTCCCGCTTCGATGCAGCATCCAGCACACCACGAATACCGGCAGCCACATCGCCAAACGC 60353 |||||| |||| || ||||| |||| || ||||| | || || ||| |||| Sbjct 445 CTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAGTTGCAACGGAACCATACGC 504 Query 60354 CTCACCAGACATGCCACCGGAGAACGCCTTCACCCCGGACATGGACTCTGCCTCCTGGTT 60413 |||||||| || ||||||||||| | |||||||||| | | ||||| || ||||| Sbjct 505 ATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAAGTGCTTCTGCTTCTTGGTT 564 Query 60414 CTGGATCTGGGCCATGACCAGCGCAGA--CTGGGAGATCTCAGGA 60456 ||||| |||| | | || |||||| |||| |||||||||| Sbjct 565 CTGGAGCTGGATCGTTTGCATCGCAGATGCTGG--GATCTCAGGA 607 >seq282581 Length=1216 Score = 98.7 bits (108), Expect = 5e-16 Identities = 230/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 30852 TTCACCTTCGACTCGGGCACCTCGCCTGCGGTCAAACAGATGCGGCGCAAGCTCATCCTG 30911 |||| ||||||||| || ||| |||||| || || ||| | || ||||||| | || Sbjct 701 TTCATCTTCGACTCAGGAACCGGGCCTGCTGTGAAGCAGCTTCGATACAAGCTCCTGTTG 642 Query 30912 GCCAATTGCGGATCCATCAATCTCCAGATCGATGAGATCGGCTCCAACCTGGTCGGCGA- 30970 ||||| || || ||||| ||||||| ||||||||||| |||||||| ||| | Sbjct 641 GCCAAGAATGGTTCGATCAACTTCCAGATGGATGAGATCGGTTCCAACCTTCAAGGCAAC 582 Query 30971 --AGAGGAAATCATCACCCTTTTCCTGGAGCTCTATGACCAGGGCCTGGTGAAGCAGAAG 31028 || | ||| ||| ||| |||||||| || || | || | || ||| Sbjct 581 ACTGAAGTGCTCAACACACTT---CTGGAGCTATACGATCTTGGTAAAATCAAAGCCAAG 525 Query 31029 CTGACGAAGAGCACCTCGGAGAATACCCGGGGTGAGGAAATCGATGGCAAGACGCCCACC 31088 || || | ||| |||| ||| |||||| ||| |||| || ||| || | Sbjct 524 CTCGTAAAAAATACCCCGGACAATGAACGGGGTATGGACATCGTGGGTTCGACACCTTCG 465 Query 31089 AACATGCTGCTGTTCGGCACGCCCTCCAAGCTGCTGGACGGTGGCCTGGTCGAGAGTCAG 31148 ||| | || |||||||||| ||| ||||| | ||||||| | ||| || Sbjct 464 AACGTATTGATGTTCGGCACCAGCTCAAAGCTCTTTGACGGTGCTAAAATTGAGGAGGAG 405 Query 31149 TTCTACACCCTGCTGGAGACCGGCTACGCACGCCGCTGTTTCTTCG 31194 || ||| || | ||| ||| || || || || ||||||||||||| Sbjct 404 TTTTACTCCTTCTTGGCGACGGGTTATGCTCGACGCTGTTTCTTCG 359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235466421419768