Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq261671 102 2e-16 seq18390 98.7 2e-15 seq14098 86.0 1e-11 >seq261671 Length=631 Score = 102 bits (112), Expect = 2e-16 Identities = 236/356 (66%), Gaps = 5/356 (1%) Strand=Plus/Plus Query 331958 TGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTCAACTACGTCAAT 332017 ||| |||||||| |||| |||| || || ||| ||| ||| ||| || || || Sbjct 245 TGGCTTCAAACCTTTAAGAATTTTGATAGCATCTTCAGTTGACGGTTCATTCACATCTAT 304 Query 332018 TTTCATAAAACGACGAGTTAATGCACTATCTTTCT-----CGATATTTTTACGATATTCA 332072 ||| |||||||| | |||||||| |||||| | | | || | ||| |||| Sbjct 305 TTTTTGGAAACGACGGGCTAATGCACGATCTTTTTNNNNACAAAATGCTGACGGAATTCT 364 Query 332073 TCATATGTTGTTGCACCAATTACACGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATA 332132 | ||||||||||| || || ||| | || || | ||| ||||| || |||| | Sbjct 365 TTATATGTTGTTGACCCCATGCAACGCAGCTTGCCGCCCTGAAGGGCTGGTTTTAGCAGA 424 Query 332133 TTGCTCATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCA 332192 ||| |||||||| ||| | || | ||| || |||| || | || |||||| Sbjct 425 TTGGATGCGTCCATAGCTCCACCAGATGTAGCACCTGCGCCAATCACTGTGTGGATTTCA 484 Query 332193 TCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCAAATTGTCGATGCGT 332252 |||||||| | || || || | | | | | |||||| | | | | | | |||| Sbjct 485 TCAATGAATAAAACAGCATCTGGATGCTCTTCCAGTTCTGTGACAACAGCTTTTAAGCGT 544 Query 332253 TCTTCAAATTCACCACGATACTTAGTACCAGCAGTCAATGCACCAACATTTAGTGA 332308 || ||||| ||||| |||||| | || |||||| || ||| || | || ||||| Sbjct 545 TCCTCAAAGTCACCTCGATACCTTGTGCCAGCAAGCAGTGCGCCCATATCAAGTGA 600 >seq18390 Length=9200 Score = 98.7 bits (108), Expect = 2e-15 Identities = 222/331 (67%), Gaps = 22/331 (7%) Strand=Plus/Plus Query 221821 TCTTCTTTCATTTTAACATTTTCAAACAGAAATTT--CAAGTT----------AGGATTA 221868 |||| ||||||| | |||||||| | || ||||| || ||| || |||| Sbjct 2488 TCTTTTTTCATTCTCACATTTTCTAGTAGGAATTTTACAGGTTCTTTTTTACCAGAATTA 2547 Query 221869 AGAC--TTTTG----ATATGATCAAAAATTTCAACCATTACTAAAAATAAC--TGCCCAC 221920 | || | ||| ||||||| || |||| |||||| | |||||||| || || Sbjct 2548 AAACGCTCTTGGTCTATATGATTAATTATTTGAACCATCTCAAAAAATAAAATTGACCTT 2607 Query 221921 GTATATCATTTAAACCACCCTGTTTACCTGCTACTGACCAGGCTTGGCATGGGAAACCAC 221980 | | | | || || ||||| ||||| | || | ||||||||||| ||||| Sbjct 2608 GGGT--CGTCAAACGCAAGTTGTTTTCCTGCAAAAGAGAACCCTTGGCATGGGCTACCAC 2665 Query 221981 CCATTAATAAATCTATTTTGTCCCACTCAATATCCCATTCTCTCCACTTAGTTACATCAC 222040 | | |||||| || | ||| ||||||| |||||||| ||| ||||| ||||| | Sbjct 2666 CGTGGATTAAATCAATCTCTGACCAATCAATATACCATTCTCGCCATTTAGTAACATCTC 2725 Query 222041 CCAATTGGATAATATCAGGAAAGTTAGATTGAGATTCAGCTATTGCGTACTTATCAATTT 222100 | | ||| ||| | | ||| ||||| || | | || || || || ||||| | || Sbjct 2726 CTAGTTGAATAGTGTTCGGATAGTTATGCTGCGTAACTGCCATAGCATATTTATCTACTT 2785 Query 222101 CGGATGAATAATATTTTTCAACTGGGATACC 222131 | || |||||||||||||||||| || || Sbjct 2786 CACTTGCATAATATTTTTCAACTGGTATTCC 2816 >seq14098 Length=52687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 185/274 (68%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 6102 TCTCTGTAGTTGTTCTTTTACTTGTTCAACGTGGTTTTTATAAATGTGGCAATCACCACC 6161 |||||| | |||| || |||| || | |||||| ||| | || ||| || || Sbjct 22397 TCTCTGCAATTGTAACTTAGCTTGCTCTAAATGGTTTGAATACAAATGAACATCCCCTCC 22338 Query 6162 ATTCCAAATAAATTCACCAACATCTAAACC-CGTAATTTGTGCAATCATATGAGTTAGTA 6220 |||||| |||||| | | | |||||| | || ||| ||| | ||| | || | | Sbjct 22337 CGTCCAAACAAATTCTTTAGCCTTTAAACCACATACTTT-TGCCACCATTTCTGTCATCA 22279 Query 6221 GTGAATAACTACTGATATTAAATGGAACTCCCAAAAATAGATCAGCGGATCTTTGATGTA 6280 | | ||| ||| |||||||| || | ||| ||||| | |||| ||||||||| | | Sbjct 22278 GAGCATAGCTAGCAATATTAAAAGGCAGTCCTAAAAACACATCACAGGATCTTTGGTAAA 22219 Query 6281 GAATGCAGCTTAGTTTCCCTTGTACTACACAAAATTGTACAAAGCTATGACAAGGTGGCA 6340 | || | || || | | ||||| ||||||| | ||| |||||| || | | Sbjct 22218 GCTGACAAGACAATTGTCCATTTGCTACATAAAATTGGAACAAGGCATGACAGGGAGATA 22159 Query 6341 ACGTCATATCATCAAGCTCACCAACGTTCCATGC 6374 | | ||||||||| | |||||||||||||| || Sbjct 22158 AAGCCATATCATCTAATTCACCAACGTTCCAAGC 22125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109711574917568