Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq121188 132 2e-26 seq76541 98.7 4e-16 >seq121188 Length=15723 Score = 132 bits (146), Expect = 2e-26 Identities = 483/743 (65%), Gaps = 10/743 (1%) Strand=Plus/Plus Query 62244 GGATGAATCCACCTTGTTGACCTGTAACTTCAATACCTACAGATTGAGGTTGGTATTCAA 62303 |||| || ||||| || ||||| |||| |||| ||| || || || | ||| || Sbjct 533 GGATAAACCCACCCTGCTGACCAGTAATCTCAACACCGACGCTCTGTGGATTGTACTCCT 592 Query 62304 CTACCAATCTAAATAAATCATCGAAGTTTTTATCCATAAGCTGACGTCTACAGATACCAT 62363 | ||||| | ||| ||||| |||| ||||||| ||| || ||| | ||| | Sbjct 593 CAACCAAACGAAACAAATCGTCGATTGAGGTATCCATTGTCTGTCGAGCACAAACACCGT 652 Query 62364 CAACCCAGAACCAGTCACCATTACTATTGATA-GCCCATACAGATATTACAGAGAAGTCT 62422 |||||||| ||| || ||||| | | | ||| |||||||| ||| ||| || | || Sbjct 653 CAACCCAGTGCCAATCCCCATT-CGAGTCATACGCCCATACTGATTGTACGGAATAATCC 711 Query 62423 GCTGATTGCTTATCAGAGGTAGCAAAGTCAGTAGTGATATAAAAATTAAAATGCCCTCTA 62482 || | ||| || || || ||||||||||| ||||| || || ||| ||| || ||| Sbjct 712 GCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAAT-CCTTCTT 770 Query 62483 -TTCAGTAGTAGAGATTTACGTTTATACCACTGAATATCTGACTCAAGAATTAGTCGTTC 62541 ||| || | ||| |||| |||| || || || ||| | || Sbjct 771 GTTCGCAAGGATGTGTTTCCGTTGGAACCAACCGATGTCACCTTCCTGAACCAAACGAGA 830 Query 62542 TTCATCAGAAGTAATACGTAACATCAATTCTTGGTTAAATGCAGCTACCTGTCCT-GTAG 62600 |||||| ||| || | ||| | || || || | | | | ||| || | Sbjct 831 CTCATCATCCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTG 890 Query 62601 ATACAGCAAGGTCATACTGACCTTTAACAAAGTCATAAGAGAATCTGTCTTCCCATGCTC 62660 | | ||| || || | |||| | ||| || | || | ||| ||||||| Sbjct 891 CTTGAAGAAG-TCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTG 949 Query 62661 CTAC-AAATTCTTCTCTCGTACATGGGAATTTCTCACATATTGGGAATACGTTGACGTAC 62719 | |||| ||||| ||| || || | || ||| | ||| | ||||| || | | Sbjct 950 GTTGGAAATCCTTCTTATCAACA-GGAAACTCCTTACACACTGGCCAAACGTTCACCTCC 1008 Query 62720 CAACCCCCAGACTCAACAGCTTCATAAAGAATATCGTTCTTGTTAAAGGGTGTGCCACTG 62779 || | |||||||| | |||| ||| | || |||||||||| ||||| || ||| | Sbjct 1009 CATGCACCAGACTCGATTGCTTGATACACGATGTCGTTCTTGTCGAAGGGAGTCCCATTC 1068 Query 62780 AAAACAATTTTTCTACGAGTA-GGGTCAAGAGCATAGTCTACTCCTTTATACACAGTATC 62838 | || | | ||| || | |||| |||||| | || || || || || |||||||| Sbjct 1069 AGAATAGTCTTTG-ACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATC 1127 Query 62839 TTTAATTGCCTGCATTGTGCTCTTAGATTTAGCATCATCATCACTAACCAAATCATCAAG 62898 ||||| | ||| | | ||| || ||||| ||||| | ||| ||||| || Sbjct 1128 GTTAATCTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAG 1187 Query 62899 CACAGCTAAAACAGGACGTTTACCAAAGATTTTAGTACCACGTAAACCAGTTTTAGCACC 62958 || || | ||| |||||||||||||| || |||||||| | ||||| || ||||| Sbjct 1188 AACTGCAAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACC 1247 Query 62959 AAACATACGAACACCTAACTTAT 62981 |||||||| ||||| ||||||| Sbjct 1248 GAACATACGGACACCAAACTTAT 1270 >seq76541 Length=11138 Score = 98.7 bits (108), Expect = 4e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 21603 ACATATCTGGCTACAAACTCTTGTGCAGGTAATGAGTTAGGGCTAAAAGCTCAAGCTCAT 21662 || |||||||| || || || ||||| ||||| ||||| || || || | ||| ||||| Sbjct 581 ACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGAAGGTTCAGGCTCAG 522 Query 21663 GAATTTGCAGGAAACTATGCACAAGAAGATATTGATGATATTACTAAAATCCCATTACCA 21722 || || |||||||||||||| ||||| || |||| || || | ||||| | ||| Sbjct 521 GAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGCAGATCCCTCTGCCA 462 Query 21723 GACCTTCTGGAGTACAACTTAATTGACTGTCTAAGTACTTGGTATGT 21769 | || |||| |||||| | | || | ||| |||||||||||| Sbjct 461 AAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATGT 415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 217874120904176