Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027388.1 Length=73050 Score E Sequences producing significant alignments: (Bits) Value seq121188 134 6e-27 >seq121188 Length=15723 Score = 134 bits (148), Expect = 6e-27 Identities = 356/535 (67%), Gaps = 14/535 (3%) Strand=Plus/Plus Query 70379 TTCGCAGAGGTAGCAAAGTCAGTGGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGC 70438 |||| || || |||||||||||||||| |||||| || || ||||||||| | || Sbjct 721 TTCGACGACGTGGCAAAGTCAGTGGTGATGTAGAACTTATAATCCTTCTTGTTCGCAAGG 780 Query 70439 ACG---TTGCGTCGCATGTACCAAGCCACCTCACCATCCTGGATGAGCCGGTCTTCGTCG 70495 | | || ||| | | ||||| | | ||||| ||||| | | || || || Sbjct 781 ATGTGTTTCCGTTG---GAACCAACCGATGTCACCTTCCTGAACCAAACGAGACTCATCA 837 Query 70496 GACATGATCTGGAGCATAAGCTCCTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCC 70555 | ||| | |||||||||||||| ||||| ||| | || ||| | |||| Sbjct 838 TCCTGAATCCGAAGCATAAGCTCCTGACGGAACGACTCAAGTTTACCTTGTTGCTTGAAG 897 Query 70556 AGGGTGTACTTCTGCAACACGAAGTCGTAGGTGAATCGGTCAGGCCATGCACCACGGAAC 70615 | | ||| | || || ||||||||| || || || |||||||| |||| Sbjct 898 AAGTCGTAATCCTCTTTCAACTGGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAA 957 Query 70616 T-CTTCCCGCGAGCAGGGGAACCGCTCACATACCGGGTAGACGTTGACCTTCCAAGCACC 70674 | |||| | || || ||| || ||| || || | ||||| |||| ||| ||||| Sbjct 958 TCCTTCTTATCAACA-GGAAACTCCTTACACACTGGCCAAACGTTCACCTCCCATGCACC 1016 Query 70675 AGACTCCACTGCTTTGTACA--ATGGATCCTTCGCGTTGAACGGTGTACCCGACCAG-AT 70731 |||||| | ||||| |||| ||| || ||| || ||| || || ||| ||| || Sbjct 1017 AGACTCGATTGCTTGATACACGATG--TCGTTCTTGTCGAAGGGAGT-CCCATTCAGAAT 1073 Query 70732 GATCATGTTCTTCTTCGGGTGCAGTGCATAGTCCACTGCCTTGTACACCGTGTCCTCAAT 70791 || | ||| | ||||| || || | || | ||||||| || || || | ||| Sbjct 1074 AGTCTTTGACTTTTGTGGGTGAAGAGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAAT 1133 Query 70792 GGCTGCGATGACAGTGGGCGAGCGAGCATCTTCGTCCGAAACCAAGTCATCCAGTACCGC 70851 || || |||| || || |||||||| || || | ||||||||| || || || Sbjct 1134 CTTCGCCATCGCAGTTGGAGACTTCGCATCTTCATCTGAGATCAAGTCATCGAGAACTGC 1193 Query 70852 AAGCTGCGGACGTTTACCCATCTCCTTCGCACCACGGACACCAGTCTTGGCACCG 70906 |||| || |||||||| | ||||| |||||||| ||||| |||||||||| Sbjct 1194 AAGCGAAGGTCGTTTACCAAAGATCTTCGTACCACGGATACCAGACTTGGCACCG 1248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232813386431736