Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq287714 140 5e-28 >seq287714 Length=1605 Score = 140 bits (154), Expect = 5e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 197666 GGCGATCGTACTGGAACAGGGACGCTTTCTGTCTTTGGACGCCAGATGCGTTTTGATTTG 197725 || || ||||| || ||||| || | |||||||||||| | |||||||| ||||| | Sbjct 756 GGTGACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCTA 815 Query 197726 CGTAAAGG-TTTCCCGTTAGTCACGACTAAGAAACTCCACCTGCGTTCTATTATCCATGA 197784 ||||||| ||||| |||| ||||||||||||||| ||||| ||||||||||| || Sbjct 816 AGTAAAGGTTTTCCTGTTA-CCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGA 874 Query 197785 ACTGCTGTGGTTCCTTAGTGGGGATACCAACACCAAATATCTGGAAGATAACGGCGTTAC 197844 |||| | ||||| | |||| | || || |||| || | |||||||||||| | Sbjct 875 ACTGTTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTC 934 Query 197845 CATTTGGCGGGAGTGGCAAGATGAAAATGGGAACCTTGGCCCCCTGTATGG 197895 |||||| || ||| ||||||||| || | ||||| || | ||||| Sbjct 935 TATTTGGGATGAATGGGCAGATGAAAACGGTGATCTTGGTCCTGTTTATGG 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 766418580249280