Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_027981.1 Length=42612 Score E Sequences producing significant alignments: (Bits) Value seq221573 109 1e-19 >seq221573 Length=809 Score = 109 bits (120), Expect = 1e-19 Identities = 258/385 (67%), Gaps = 16/385 (4%) Strand=Plus/Minus Query 14943 GAAACGAGACCCGCAATGGCTGAACAATACCTACACGGCGCAGAAGTCGTCGAAATTGAT 15002 |||| || |||| |||| |||| |||| | | ||||||| || ||||||||||| ||| Sbjct 421 GAAAGGAAACCCA-AATGCCTGAGCAATTCTTTCACGGCGTCGAGGTCGTCGAAATCGAT 363 Query 15003 AATGGGGCCCGCCCCATTCGCA----CCGCTCAAAGTGGTGTGATTGGTTTGGTGGGGAC 15058 | || |||| ||||||| | |||||| |||||| ||| | || || || Sbjct 362 ACCGGCACCCGGCCCATTCAAACTGTCCGCTC----CTCTGTGATCGGTCTTGTCGGCAC 307 Query 15059 GGCACCTGATGCCGATGCCACCGCCTTTCCTCTGAATACGCCGGTACTGATTGCCGGTAG 15118 || || |||| |||| | ||||| || || ||||| || |||| || |||| Sbjct 306 CGCGCCCAATGCGGATGGTGACAAATTTCCACTTAACACGCCAGTTTTGATCGCGGGTAA 247 Query 15119 CCGCCGAGAAGCGGCCAAGCTGGGCGCAGGTGGTACATTGCCACAGGCAATTGATGGCAT 15178 ||| || || || ||||| || | || || ||||| || ||||||| | Sbjct 246 GCGCACCGAGGCCGCTAAGCTTGGTCTTGTCGGCACCTTGCCCGGTGCCATTGATGATGT 187 Query 15179 TTTTGACCAGACTGGCGCAGTGGTGGTGGTGATTCGCGTGGATGAGGGCG---TGGATAG 15235 |||||||| |||||||| | | | ||| | || || |||||||| |||| Sbjct 186 CTTTGACCAAGCTGGCGCAATCATTATTGTGGTGCGGGTCTCTGAGGGCGCAACGGAT-- 129 Query 15236 CGCGGCCACTCA-ATCCAATGTGATCGGCAAAGTGGATGCCGACACCGAGCAGTACACCG 15294 || | || || ||||||||||||||| || ||| |||| || ||||| | | Sbjct 128 -GCCGAGACACATTTCCAATGTGATCGGCGGCGTTGATCCCGATACTGAGCAACGCTTGG 70 Query 15295 GCATTCTGGCGCTGCTGTCTGCCGA 15319 |||||| |||||| || |||||| Sbjct 69 GCATTCAGGCGCTCCTTGATGCCGA 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135769873571808