Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28030 116 5e-21 seq124498 86.0 8e-12 >seq28030 Length=5412 Score = 116 bits (128), Expect = 5e-21 Identities = 285/419 (68%), Gaps = 10/419 (2%) Strand=Plus/Plus Query 122385 CTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAATGGATT 122444 ||||||||||||||| ||||| ||||| ||| ||| ||||||||||||||||| || || Sbjct 1270 CTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTTCCATAAAGTCAAAGGGGTT 1329 Query 122445 CTTCGCGTTCCAAATGG-GTGGCACCCCAACTTGTTTGAGGAGACGATCCGACACATACT 122503 | || | || | |||| | | || | ||||| ||||||| ||| | | Sbjct 1330 TTCATTATTGTAGATCTTGGGGCAGTCAAGCTC-TACAAGGAGTCGATCCGCGACAAATT 1388 Query 122504 CAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACATGGGA-GTGCGTCC 122562 ||||||| ||| ||| | ||||| |||| | | || |||| | || || Sbjct 1389 TGATGTACTGCACCATGGAATCACAATTCATTCCGAGCAT-TCGCACGGGAAGAGCCTCT 1447 Query 122563 AAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATAGTTTCGGTA 122622 || |||| | |||| ||| |||| || ||| ||||| | ||| || | Sbjct 1448 GTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGATTTCCGTGATCCGCTCCACA 1507 Query 122623 GTGGGTCTATTA-CGCAAAGTCTTGAAGA-GCTCCACGGCAAACTCCTGGTGGAGACCCT 122680 | ||| ||||| || | |||| ||| | | || |||||| || ||| || || | Sbjct 1508 GAGGGCTTATTAGCGAGATGTCT-GAACATGAGGCA-GGCAAAGTCTGTGTGAAGCCCTT 1565 Query 122681 CATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCTTCA 122740 | || || ||||| ||||| || ||||| || || |||||||| || |||||||||| Sbjct 1566 CGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCA 1625 Query 122741 ACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAACGC 122798 ||| |||| | ||| || |||||||||||||| || || ||||| |||||| || Sbjct 1626 GCCAGAAAATGGAAGCA-AAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGC 1683 >seq124498 Length=1304 Score = 86.0 bits (94), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 111279 TGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 111338 ||||||| | |||||| || |||| ||||| | ||||| || || | |||| ||| | Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 111339 TACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 | ||| |||||| ||||||||||||||||| || ||||| |||||||| Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625766248953600