Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq124498 122 1e-22 seq182767 120 4e-22 >seq124498 Length=1304 Score = 122 bits (134), Expect = 1e-22 Identities = 227/331 (69%), Gaps = 2/331 (1%) Strand=Plus/Minus Query 118753 TGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 118812 ||||||| | |||||||||||| | || || | ||||||||||| | ||||| ||||| Sbjct 370 TGTACTCCACAATTTCCGTGCATAGATTGGAGCATTTAATGGTGCCTAGGTTCTGTTGAT 311 Query 118813 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 118872 | |||||| ||| || ||||||||||| ||||| || ||||| |||||||| |||| | Sbjct 310 TGGACTTTCGGTTGCAAGCATCCTTGTAGAGCATATAAGGCGTTCCCGTCTCGATTTGCG 251 Query 118873 ACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCT 118931 ||| | || |||| ||||| | ||| || | | || || | | ||| || Sbjct 250 ACTCAATGATGGCCTCCCAGATCTTTTGAGCCGGGACCTGTCGCCTATAAT-TCCCTTCC 192 Query 118932 TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGT 118991 |||| ||||| ||| | | ||||| | || ||| | || | | || || Sbjct 191 GCCTCATACTTCAAGTACAAGCTCTCAAAGGCCTCTCCCCAGCAGTCCGCTAATCCAGGG 132 Query 118992 GCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGG 119051 || || ||||| | | ||| ||| |||| || || |||||||||||||| Sbjct 131 CTCTCATGCGGGCACATCAAGCTCCAAACGCCATCCTCTTCCACACGCTTCATGAAGAGA 72 Query 119052 TCTGGGATCCAGAGCGCCGAGAAGAGATCCC 119082 || ||||||||||| || |||| | |||| Sbjct 71 TCCGGGATCCAGAGGGCGTAGAACAAGTCCC 41 >seq182767 Length=2084 Score = 120 bits (132), Expect = 4e-22 Identities = 292/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Minus Query 117852 CCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTT 117911 || || ||||| || ||||||| |||| | ||||| |||| | ||| | ||| Sbjct 1982 CCTGTTTTGAGTCCAAGCTTCCACCCATAGAAGTGCATGGAGGTGAGCTTTCC-ATAGTT 1924 Query 117912 GGACTTTCC-ATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC-CGATCCG 117969 || || | | ||| | || | ||| ||| ||||| ||||| || ||| ||||| | Sbjct 1923 GGGCTGTGCGATGTGAATATTGAGACTCTGGCTCTGATCAATGAA-CGCCCCTCGATCTG 1865 Query 117970 CCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAA 118029 | ||||| | || | |||| ||| ||||| || ||| | ||||| ||| | Sbjct 1864 CAGCCATTTGAAGGATGGTCTTCTGTGAGATCTCCCAGACGGTCTTATAGAGCGCCTTGA 1805 Query 118030 TATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATC-- 118087 | ||||| || || ||| ||| ||| | ||||||| ||| | || | || Sbjct 1804 TGTCATCAGGAATTTCCGGGATCCCTTGAACGGATCCATTG---TTGGCAATTATATTTT 1748 Query 118088 -CTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGA 118146 |||||| |||| ||||||| ||| | |||||||| | ||||| | || | Sbjct 1747 GCTTCATGTCCTCATCCCAGAGATCAAGTTCCGTGAGATCCCGGAGAAGATGATGGTTCA 1688 Query 118147 CAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAA 118206 | || ||||| || | |||| |||| ||||| |||| ||||| | ||| | Sbjct 1687 CGACCTGGAACTCCCCAGAGAGGACACGTCGGGAGTAGATGTTGGAGGTGTAGGCCTCGA 1628 Query 118207 AGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAA 118266 || ||| ||||| |||| |||||| || |||||||| ||||||||||| |||| ||||| Sbjct 1627 TGCCCTCGTTGTTCCCCAGGATTTGTGCCGTGGAGGCCGTGGGCATGGGCGCCAAGAGAA 1568 Query 118267 GGCTGTTACGGAGACC 118282 || ||| ||||| || Sbjct 1567 GGGAGTTGCGGAGGCC 1552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616204071328960