Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq28030 150 2e-31 seq182767 100 3e-16 >seq28030 Length=5412 Score = 150 bits (166), Expect = 2e-31 Identities = 352/521 (68%), Gaps = 9/521 (2%) Strand=Plus/Minus Query 94441 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGG-AAGAC--TCTAAAT 94497 ||||| | |||||||| |||||| |||||| |||||| |||| ||| ||| Sbjct 2061 TGGACGGTCGAAGAGGTGGATCTCAGCAAGGATACCCTAGATTGGGAAGAGCGTCTGAAT 2002 Query 94498 GAAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATT 94557 || | || | |||||| | |||| || || || |||| ||| || ||||| Sbjct 2001 GACGAAGAGCGTTATTTCATATCTCATGTCCTTGCCTTTTTCGCTGCATCTGACGGAATC 1942 Query 94558 GTTTTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 ||| |||||| ||| | || | | |||||| ||| |||||||| ||| | Sbjct 1941 GTTAATGAGAACATCGTCGAGCGTTTCACCGCTGAGGTCCAAGTTACTGAAGCGCGATGC 1882 Query 94618 TTCTATGCGTATCAGTGTCATAAT-GAAATGGTGCATGGGGAGACATACAGTAAACTCAT 94676 ||||||| | |||| ||| || |||| | || || | ||| |||||| Sbjct 1881 TTCTATGGCTTTCAG-GTCGCCATCGAAAACATTCACTCTGAAATGTACTCATTACTCAT 1823 Query 94677 AGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGT 94736 |||| ||||| |||||| | || ||| | |||||| | ||| | | | | | Sbjct 1822 TGACACCTATATCAAGGATAAAGAGGAAAAGGGTCGCCTCTTTAACGCCCTGGACA-ACT 1764 Query 94737 TCCGTG-TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 94795 ||| || |||||||||||| || | ||||||| |||||| | | | || || Sbjct 1763 TCCCTGCTATTCAAAAGAAGGCTGCTTGGGCTCAAAAGTGGACGCAGTCTACCTCTGCTT 1704 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||| |||||| || | || |||||| || || || || |||||||| || |||| Sbjct 1703 CCTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCT 1644 Query 94856 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 | ||| | |||| ||||| |||||||| || |||||||| || ||| ||||| ||| Sbjct 1643 T-TGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAAC 1585 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || || || ||||||||||| || || ||| ||| ||||| Sbjct 1584 GAACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTTGC 1544 >seq182767 Length=2084 Score = 100 bits (110), Expect = 3e-16 Identities = 289/441 (66%), Gaps = 8/441 (2%) Strand=Plus/Plus Query 105491 GAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAA 105550 |||| || || || ||| || ||| |||| || ||||| || |||||||| |||||| Sbjct 1546 GAGAGTGGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAA 1605 Query 105551 ATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACC 105610 ||| |||| || || || || | || ||||||| | |||||||| || | | Sbjct 1606 ATCCTGGGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTC 1665 Query 105611 CTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGT 105670 ||| | || ||||| | | || ||| | ||||| | || |||| || ||| | Sbjct 1666 CTCTCTGGGGAGTTCCAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAACTTGAT 1725 Query 105671 CTCTGGTCCAAGGATATGAAGGA---TCTCATGGTGAAAGCGGGTGGTTCCATTCAAAAT 105727 |||||| |||| |||||| | | | || | || ||| ||| ||||| Sbjct 1726 CTCTGGGATGAGGACATGAAGCAAAATATAATTGCCAACAA---TGGATCCGTTCAAGGG 1782 Query 105728 ATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATG 105787 || ||| ||||| |||| || ||| | | || || || ||||| ||| | Sbjct 1783 ATCCCGGAAATTCCTGATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACAG 1842 Query 105788 AAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATG 105847 ||| || || | ||||| |||||||| || ||||||||||| || || ||| | Sbjct 1843 AAGACCATCCTTCAAATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAGAGTCTC 1902 Query 105848 AATCTCTTCAT-GGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTG 105906 ||| | ||| | | || ||||| ||| |||||| | || |||||| | || | || Sbjct 1903 AATATTCACATCGCACAGCCCAACTATG-GAAAGCTCACCTCCATGCACTTCTATGGGTG 1961 Query 105907 GAAGAAGGGTCTCAAAACGGG 105927 |||| || |||||||| || Sbjct 1962 GAAGCTTGGACTCAAAACAGG 1982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581156570011840