Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq28030 140 4e-28 seq124497 107 2e-18 seq182767 102 9e-17 >seq28030 Length=5412 Score = 140 bits (154), Expect = 4e-28 Identities = 577/883 (65%), Gaps = 34/883 (4%) Strand=Plus/Minus Query 59563 TTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGT 59622 |||| || | ||||| || | ||| | |||| || ||||| | | |||||| Sbjct 2117 TTCCCATCCAATACCCAGACATCTGGAACATGTACAAAAAAGCCGTTGCCAGCTTCTGGA 2058 Query 59623 CCGTCGAGGAGATTGACCTCGCC--GGAGACCTGAAGGATTGGGACAAGC---TCAATTA 59677 | ||||| ||| | || ||| | ||| ||| | |||||||| ||| | ||| | Sbjct 2057 CGGTCGAAGAGGTGGATCTCAGCAAGGATACCCTA--GATTGGGAAGAGCGTCTGAATGA 2000 Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||| |||| ||||||| ||||| ||||| ||||| || ||| ||||| || Sbjct 1999 CGAAGAGCGTTATTTCATATCTCATGTCCTTGCCTTTTTCGCTGCATCTGACGGAATCGT 1940 Query 59738 GATGGAAAATATAGACATGAACTTTTCCAAG--GATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || || | | || | |||| | || ||||| || | || || || | Sbjct 1939 TAATGAGAACATCGTC--GAGCGTTTCACCGCTGAGGTCCAAGTTACTGAAGCGCGATGC 1882 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||| | | |||| ||| || ||| || ||||| || | |||||| | | || Sbjct 1881 TTCTATGGCTTTCAGGTCGC-CATCGAAAACATTCACTCTGAAATGTACTCATTACTCAT 1823 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 || | | |||||||| || || |||| | | || || ||| | || | | Sbjct 1822 TGACACCTATATCAAGGATAAAGAGGAAAAGGGTCGCCTCTTTAACGCCCTGGACAACTT 1763 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATG-AGTC--CTGGAGCATC 59971 ||| || || || | || || | ||||| |||||| | |||| | || || Sbjct 1762 CCCTGCTATTCAAAAGAAGGCTGCTTGGGCTCAAAAGTGGACGCAGTCTACCTCTGCTTC 1703 Query 59972 ATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 |||| | | || ||||||||||||| ||||||||| || |||||||| || || || Sbjct 1702 CTTTGGAGAGCGAATCATAGCTTTTGCGGCCGTGGAAGGGATTTTCTTCTCCGGGTCCTT 1643 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | ||||||||||| || |||||||| |||||||| || || | ||||| ||||| Sbjct 1642 TGCTTCCATTTTCTGGCTGAAGAAGCGTGGACTCATGCCTGGGCTCACGTTCTCTAACGA 1583 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT 60151 || ||||| || ||||| || || || || ||||| || | | | |||| || | Sbjct 1582 ACTCATTTCTCGTGACGAAGGGCTTCACACAGACTTTGC-CTGCCTC-ATGTTCAGACAT 1525 Query 60152 ATTGGAAAAATGCCCTTCCAAGGA--TATTCAC-AAGATTGTTC-AG-TGGGCTTGTGAA 60206 | | || | |||| || ||| |||| | || |||| || || ||| || Sbjct 1524 CTCGCTAATAAGCCC-TCTGTGGAGCGGATCACGGAAATCGTTCGAGATGCCGTTGCGA- 1467 Query 60207 GTGGAGAGCGAGTTCATCACAGAAGCGCTT-CCATGCAAACTCATAGGTATGGACGCTGG 60265 | |||||||||||| ||||||| || ||| || ||| || | | || ||| | || Sbjct 1466 -TCGAGAGCGAGTTCCTCACAGAGGCTCTTCCCGTGCGAA-TGCTCGGAATGAATTGTGA 1409 Query 60266 AGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGG 60325 ||| ||||||||| | ||||||||||| || ||| | | || ||| | Sbjct 1408 TTCCATGGTGCAGTACATCAAATTTGTCGCGGATCGACTCCTTGTAGAGCTTG--ACTGC 1351 Query 60326 ACCA--ATTTAC-GGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 ||| || ||| |||| ||||| || |||| ||||| | || || |||| || Sbjct 1350 CCCAAGATCTACAATAATGAA-AACCCCTTTGACTTTATGGAAAATATTTCCCTGGATGG 1292 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAG 60425 ||||| ||||||||||||||| || || || ||| |||| Sbjct 1291 AAAGACAAACTTCTTTGAGAAGAAAGTGGGAGAATATCAAAAG 1249 >seq124497 Length=910 Score = 107 bits (118), Expect = 2e-18 Identities = 282/427 (66%), Gaps = 19/427 (4%) Strand=Plus/Minus Query 79543 ACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCG 79602 ||||| ||||| ||||||||| | || ||||| | ||| |||| |||| || | ||| Sbjct 908 ACGTAGCGGGCTGTGTTGTTGTAGACGCGGAGAAGGGGAACGAGTCCGTTGGAGTATCCG 849 Query 79603 TTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGT--TCGAGCAGTGGATTCCGATGC 79660 || || || ||| | || | ||||| ||| | || || || || ||||| | Sbjct 848 TTGGTGCCCCCGATGTAGCTCCCCTTGGCCCGGATGCAATGGA-CATTG-ATCCCGATCC 791 Query 79661 CCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCG 79720 | || | ||||||||||| || | ||| ||||| ||||||||||||||||| | Sbjct 790 CGCCAGCAAACTTGGAGATGATGGCCGTTTGCTTAAGCGTGTCGTAGATGCCCTCGATGG 731 Query 79721 AGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGT 79780 |||| ||| | || | ||||||| || | |||||| | || | |||| Sbjct 730 AGTCCGAGGCCATGGTGAGTAAGAAGCAGGAGGAGAGCTGTGGTCGGGGTGTGGCTGCGT 671 Query 79781 TGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCT 79840 ||||||| || || | || || || ||| | ||| | || | ||||||||| Sbjct 670 TGAAGAGCGTGGGGGAGGCATGTGTAAAGTATCCCTGGGAGAGGAGGTTGTACGTCTCGA 611 Query 79841 TGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-G 79899 ||| || | | ||| || ||||||||||| || | || ||||| || | || ||| | Sbjct 610 TGATGCTCTCCACGTCTTCCCCGTGGATGCCCACGGACACACGCATCAACATGTGCTGTG 551 Query 79900 GGCG-----------TCTCGCCGACATT---CAGGTAGCCCTTCTGCAGGGTCTTGATCC 79945 |||| ||| |||| || ||||||| | || ||||||||||| | Sbjct 550 GGCGCTCCACGATCTTCTTCCCGATCTTGAGGAGGTAGCTCCGCTCCAGGGTCTTGAAGC 491 Query 79946 CGAAGTA 79952 ||||||| Sbjct 490 CGAAGTA 484 >seq182767 Length=2084 Score = 102 bits (112), Expect = 9e-17 Identities = 242/358 (68%), Gaps = 11/358 (3%) Strand=Plus/Plus Query 20369 GGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATG 20428 || || |||||||| | ||| | ||||||||||| || ||||| || || || ||| || Sbjct 1552 GGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAAATCCTG 1611 Query 20429 GGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCC 20488 ||||||||||||| ||||| | ||||| |||||||||||| || ||| || | Sbjct 1612 GGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTCCTCTCT 1671 Query 20489 GGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGA-CTTGCAGAAGATCGATATGTG 20547 || |||||| | || ||| | || || |||| || || | ||| | ||| | || Sbjct 1672 GGGGAGTTCCAGGTCGTGAACCATCATCTTCTCCGGGATCTCACGGAA-CTTGATCTCTG 1730 Query 20548 GTCGCCCAAAATTAAG---AATGAAATTGTCCGAGCCGGCGGGAGCG-TCCAGGCAT--T 20601 | | || ||| ||| ||||| || | | || || || ||| || Sbjct 1731 GGATGAGGACATGAAGCAAAATATAATTG-CCAA--CAATGGATCCGTTCAAGGGATCCC 1787 Query 20602 GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAG 20661 ||| || || | || |||||| | || | |||||| ||||| ||| ||||||||| Sbjct 1788 GGAAATTCCTGATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACAGAAGAC 1847 Query 20662 CATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAAT 20719 |||| | | ||||| || ||||| || || | ||| || ||| |||| |||||| Sbjct 1848 CATCCTTCAAATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAGAGTCTCAAT 1905 Score = 82.4 bits (90), Expect = 8e-11 Identities = 118/165 (72%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGC 78531 |||||||||| || || |||| || ||| |||||| || | ||| || || Sbjct 1712 AGATCCCGGAGAAGATGATGGTT---CACGACCTGGAACTCCCCAGAGAGGACACGTCGG 1656 Query 78532 AGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTC 78591 ||||||||||| ||||| | ||||| ||||||||||||||| ||| || || || Sbjct 1655 GAGTAGATGTTGGAGGTGTAGGCCTCGATGCCCTCGTTGTTCCCCAGGATTTGTGCCGTG 1596 Query 78592 GAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCA 78636 ||||| || |||||||| || | || || || || || || ||| Sbjct 1595 GAGGCCGTGGGCATGGGCGCCAAGAGAAGGGAGTTGCGGAGGCCA 1551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546545887079040