Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq147988 127 2e-24 seq28030 122 9e-23 seq182767 104 3e-17 seq31316 104 3e-17 seq124497 93.3 5e-14 >seq147988 Length=4520 Score = 127 bits (140), Expect = 2e-24 Identities = 326/493 (66%), Gaps = 19/493 (4%) Strand=Plus/Plus Query 159001 TGTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTG 159060 || || | |||||||||||| | | || || |||| || || ||||| || |||||| Sbjct 1886 TGCTGCAACATGAGCCACATTCCTTGTACATAGTCCTTGGCATGTCCCCAATCACGCTTG 1945 Query 159061 GCATCCATGTTCCCGAGCTCGATGACTTTT------CCAGACTTTTTCCACTCAGCCAGA 159114 | |||| ||| || || || | | | | || ||| || || | ||| Sbjct 1946 GAGTCCAAGTTTCCAAGTTCAAAGCAATCTAGGAGCCCCAACTGAATCTTGGCAAC-AGA 2004 Query 159115 CCGAGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAAC 159174 || ||| ||||| | ||| ||||| | |||| | |||| |||||||||||| Sbjct 2005 GCG--CGTAATCTTCCTCGTGACAAAGTTCTCTCCTCTCCGTGGACTCTCATGGTTAAAG 2062 Query 159175 AGAATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTAT 159234 || || || |||| || |||| | ||||| ||| ||| | || | |||||| Sbjct 2063 AGGATCCCATTACAGGCAAACATATCATAGGCCTCCCGGAAGTTAATCACGGACCAGTAG 2122 Query 159235 CCAAAGAGCTTGGAGACGCCGTATGGACTCCGAGGATAAAATGGTGTCCCCTCATTTTGA 159294 || ||||||||| ||||| || ||||| ||||||||||| || ||| || || ||| Sbjct 2123 GCATAGAGCTTGGCCACGCCATAGGGACTACGAGGATAAAAAGGCGTCGTTTCCTTCTGA 2182 Query 159295 ATTGGTTCCTGAACCTTTCCAAACATTTCACTCGTCCCAGCCTGATAAAATTTGA----- 159349 ||||||||||||||| ||| || || |||||||| || |||| Sbjct 2183 GGAACCTCCTGAACCTTTCCATACAACTCTGAAGTAGATGCCTGATAGAACTTGACGGAC 2242 Query 159350 ATTTAGAAACAAAATTGAATTGACGAATTGCTTCAAGAATTCGAAGGGTACCCATGGCGT 159409 | | | | | | || ||| || || ||||||| || || || |||| |||| Sbjct 2243 TTCTCCAGGCCACA-TGTCTTG----ATGGCGTCAAGAAGACGCAGCGTTCCCACGGCGA 2297 Query 159410 CGACGTTCGCCGTGTACTCGGGCTGCTCAAAAGAGAGCTTCACGTGTGACTGGGCTCCGA 159469 | || | ||| |||||||| | | || || |||| ||| ||||| ||||||||| | | Sbjct 2298 CAACTTCCGCGGTGTACTCAGCCATGTCGAAGGAGACCTTGACGTGAGACTGGGCTGCAA 2357 Query 159470 GGTTATAGACCTC 159482 | || |||| ||| Sbjct 2358 GATTGTAGATCTC 2370 Score = 122 bits (134), Expect = 9e-23 Identities = 241/355 (68%), Gaps = 9/355 (3%) Strand=Plus/Plus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||||||| |||||||| |||| || ||||||| || || ||||| || |||||| Sbjct 1886 TGCTGCAACATGAGCCACATTCCTTGTACATAGTCCTTGGCATGTCCCCAATCACGCTTG 1945 Query 124611 GCATCCAGGTTTCCGAGCTCGATTGG--CTTGG----CCGTCTTGTTCCACTCCGCCAAA 124664 | |||| |||||| || || | || || || || || | || | | Sbjct 1946 GAGTCCAAGTTTCCAAGTTCAAAGCAATCTAGGAGCCCCAACTGAATC---TTGGCAACA 2002 Query 124665 CCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTCGTGGTTGAAC 124724 | |||||||| | ||| ||||| | || | || | ||| ||||| || Sbjct 2003 GAGCGCGTAATCTTCCTCGTGACAAAGTTCTCTCCTCTCCGTGGACTCTCATGGTTAAAG 2062 Query 124725 AGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATAC 124784 || || ||| |||| |||||||| | || | ||| ||| |||| || ||| || Sbjct 2063 AGGATCCCATTACAGGCAAACATATCATAGGCCTCCCGGAAGTTAATCACGGACCAGTAG 2122 Query 124785 CCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGG 124844 || ||||||||| |||||||||||| || || || || || || || |||| || || Sbjct 2123 GCATAGAGCTTGGCCACGCCATAGGGACTACGAGGATAAAAAGGCGTCGTTTCCTTCTGA 2182 Query 124845 GTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATAGAATTTGA 124899 | | | ||||| ||| ||| ||| ||| |||||| ||||||||||| |||| Sbjct 2183 GGAACCTCCTGAACCTTTCCATACAACTCTGAAGTAGATGCCTGATAGAACTTGA 2237 >seq28030 Length=5412 Score = 122 bits (134), Expect = 9e-23 Identities = 362/544 (67%), Gaps = 22/544 (4%) Strand=Plus/Plus Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848 ||| || || |||| || |||||||| |||||||||||||||| ||| || |||| | Sbjct 1582 TTCGTTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGC 1641 Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908 ||||| || |||||| || ||||| || |||||| || | | || | | || Sbjct 1642 AAAGGACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAA 1701 Query 74909 CGGTGCATCGGAAG---TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG-ACCGCAG 74964 | ||| || || | |||| | |||||||| |||| ||| |||| | |||| Sbjct 1702 GGAAGCAGAGGTAGACTGCGTCCACTTTTGAGCCCAAGCAGC-CTTCTTTTGAATAGCAG 1760 Query 74965 GGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGT 75024 ||| | || | || | ||||||| |||| || || |||||||| ||| Sbjct 1761 GGAAGTTGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGT 1820 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAG 75083 |||| | | ||||||| | || || ||||| ||| || ||| ||| | | ||| Sbjct 1821 CAATGAGTAATGAGTACATTTCAGAGTGAATGTTTTCGATG-GCGACCTGAAAGCCATAG 1879 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATC--CTTTGAAAAATTCATGTCGATATTCTCCA 75141 || | ||||| || | || || || || | ||||| || | |||| ||||| Sbjct 1880 AAGCATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTC--GACGATGTTCTCAT 1937 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATA--AAGTGGCGCTC 75199 | ||||| ||||| || || |||||||| || || || | |||| || | ||||| Sbjct 1938 TAACGATTCCGTCAGATGCAGCGAAAAAGGCAAGGAC--ATGAGATATGAAATAACGCTC 1995 Query 75200 ATCGTCAGTGA---GTTTGTCCCAATCCTTCAGGT-CCCCCGC-CAAATCAATCTCCTCG 75254 |||||| | | | | |||||||| | ||| || || | ||| | ||| ||| Sbjct 1996 TTCGTCATTCAGACGCTCTTCCCAATC--TAGGGTATCCTTGCTGAGATCCACCTCTTCG 2053 Query 75255 ACCGTCCAGAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATT 75314 ||||||||||| || ||| || |||||||||| ||| | ||| ||||| | ||| Sbjct 2054 ACCGTCCAGAAGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATG 2113 Query 75315 GGAA 75318 |||| Sbjct 2114 GGAA 2117 >seq182767 Length=2084 Score = 104 bits (114), Expect = 3e-17 Identities = 290/438 (66%), Gaps = 13/438 (3%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| ||||||||||| ||| ||||||| ||||| || || || ||||| || ||| || Sbjct 1552 GGCCTCCGCAACTCCCTTCTCTTGGCGCCCATGCCCACGGCCTCCACGGCACAAATCCTG 1611 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 || |||||||||| ||||| | ||||| ||||||||||| || || ||| | Sbjct 1612 GGGAACAACGAGGGCATCGAGGCCTACACCTCCAACATCTACTCCCGACGTGTCCTCTCT 1671 Query 55598 GGTGAGTT---TGTCATGATCAACAAGCACCTCGTCAAGGACCT-GCAGAAGATCAACAA 55653 || ||||| ||| || ||| | || || || ||| || | ||| | | | Sbjct 1672 GGGGAGTTCCAGGTCGTG---AACCATCATCTTCTCCGGGATCTCACGGAACTTGATC-T 1727 Query 55654 GTGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCA---GAATCT 55710 ||| | | | || ||| |||| | ||| || ||||| || || | Sbjct 1728 CTGGGATGAGGACATGAAGCAAAATATAATTGCCAACAATGGATCCGTTCAAGGGATCCC 1787 Query 55711 GGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 ||| |||||| |||||| | | || ||| || |||||||| ||||||||| Sbjct 1788 GGAAATTCCTGATGACATCAAGGCGCTCTATAAGACCGTCTGGGAGATCTCACAGAAGAC 1847 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | || | ||| ||| ||||| || |||| ||| || ||| |||| ||| || || Sbjct 1848 CATCCTTCAAATGGCTGCAGATCGAGGGGCGTTCATTGATCAGAGCCAGAGTCTCAATAT 1907 Query 55831 CTTCAT-GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGA 55889 ||| | | | || | ||| ||| | | ||| |||||||| || ||||||||| Sbjct 1908 TCACATCGCACAGCCCAACTATGG-AAAGCTCACCTCCATGCACTTCTATGGGTGGAAGC 1966 Query 55890 AGGGACTCAAGACGGGTA 55907 |||||||| || |||| Sbjct 1967 TTGGACTCAAAACAGGTA 1984 >seq31316 Length=7037 Score = 104 bits (114), Expect = 3e-17 Identities = 212/313 (68%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || || || ||||| |||| |||| ||| || | ||| ||| | || || Sbjct 3269 CCCGTGCCAATACCGTCGGCACCATTGATGAGAACCATGGGAAGAATGGGGACATAGTAC 3328 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||||||||||| | || ||| | ||||| | ||| | | ||| ||| Sbjct 3329 TCCGGCTCCACCTTCAAATTATCGTCCCGGAGATATTTGAGGACGTAGTCATCAT--GGA 3386 Query 151996 TCGAATA--TCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || || | ||||| || | || |||||||| || | | ||| Sbjct 3387 TGTGATAAATAAAGCGTGTGAGGGGACTTAATTGGGTAAAGATGTAACGCGGGGAGGCAT 3446 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 |||||| || || ||||| || || || ||||||||| ||||| |||||| || | || Sbjct 3447 GATCCTTTCCGCCGGCCAGACGAGTCCCGAACTGTCCAATGGGCTGGAGGAGATTAATGT 3506 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 |||||| ||||||| | || ||||| | ||| | || || ||| || || || | Sbjct 3507 TGTTGGAGCCCACGTAGTTTTGAGCTAGATTAATGATGGTACCCATGAGGGAGGCCTCGC 3566 Query 152174 CGTGGTGATACGC 152186 |||||||||| || Sbjct 3567 CGTGGTGATAGGC 3579 >seq124497 Length=910 Score = 93.3 bits (102), Expect = 5e-14 Identities = 232/349 (66%), Gaps = 4/349 (1%) Strand=Plus/Plus Query 53192 TTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTAC 53251 || ||||| || || |||| |||||||| || ||| | | || ||||||||| Sbjct 562 TTGATGCGTGTGTCCGTGGGCATCCACGGGGAAGACGTGGAGAGCATCATCGAGACGTAC 621 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | | ||| |||||||| || ||| | || || || |||||||| | || Sbjct 622 AACCTCCTCTCCCAGGGATACTTTACACATGCCTCCCCCACGCTCTTCAACGCAGCCACA 681 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 | || ||| | || ||||||| | | | ||| ||||| ||||| ||| Sbjct 682 CCCCGACCACAGCTCTCCTCCTGCTTCTTACTCACCATGGCCTCGGACTCCATCGAGGGC 741 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| ||||| ||| | ||| ||||||||||| | || || ||||| || Sbjct 742 ATCTACGACACGCTTAAGCAAACGGCCATCATCTCCAAGTTTGCTGGCGGGATCGGGAT- 800 Query 53432 CACTGCTCGA--ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || || || | | |||| || || || | ||| ||| || ||||| | || Sbjct 801 CAATG-TCCATTGCATCCGGGCCAAGGGGAGCTACATCGGGGGCACCAACGGATACTCCA 859 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 | ||| |||| || | |||||||||| ||||||||| ||||| ||||| Sbjct 860 ACGGACTCGTTCCCCTTCTCCGCGTCTACAACAACACAGCCCGCTACGT 908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545241808836800