Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11950 149 5e-31 seq137513 134 1e-26 seq78081 82.4 7e-11 >seq11950 Length=2906 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| ||||| ||| | || |||||||| || || || ||| Sbjct 889 ATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATCC 948 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||||||||| ||||| || || || || || Sbjct 949 GACACCATTGAAAATGTGAAGACTAAGATTCAAGACAAGGAAGGAATTCCCCCAGACCAG 1008 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| ||| | || || | ||| | || || |||||| Sbjct 1009 CAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACAAC 1068 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| ||||| || || ||||| ||| | ||| | | ||||| || Sbjct 1069 ATTCAAAAAGAGTCCACTTTGCATTTAGTTCTTCGTCTCAGAGGTGGAAT 1118 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || ||||||||||| || | || Sbjct 661 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCA 720 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 721 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 780 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| || ||| | ||||| || ||| Sbjct 781 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCCGACTATAAC 840 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || |||||| || | ||| | || || || Sbjct 841 ATTCAAAAGGAGTCTACTCTTCACTTGGTTCTGAGATTGAGAGGAGGAAT 890 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || ||||| | ||||||||||| || || || || Sbjct 1117 ATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATCT 1176 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||||||||| || || || ||||| Sbjct 1177 GACACTATTGAAAATGTCAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 1236 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||| || ||| | || || || ||| | ||||| |||||| Sbjct 1237 CAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACAAC 1296 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || ||| | || ||||| ||||| | || || || Sbjct 1297 ATCCAGAAGGAATCCACCCTTCACTTGGTCCTGCGTCTTCGTGGGGG 1343 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || ||||| | || || || || || || | || Sbjct 205 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 264 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || || || || |||||||| || || || |||||| Sbjct 265 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCAA 324 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || ||| | ||||| | || | |||||||||||| Sbjct 325 CAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAAC 384 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || ||| | ||| | ||| Sbjct 385 ATTCAAAAGGAATCCACCCTTCATCTCGTT 414 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || ||||| | || || || || || || | || Sbjct 433 ATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTCA 492 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 493 GACACCATTGAGAACGTCAAGGCTAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 552 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || ||| || ||| | || ||||| || Sbjct 553 CAGCGTCTCATTTTCGCTGGCAAGCAGCTAGAGGACGGTCGCACCCTGTCTGATTATAAT 612 Query 27168 ATTCAAAAGGAGTCGACCTTACAT 27191 ||||||||||| || ||| | ||| Sbjct 613 ATTCAAAAGGAATCTACCCTTCAT 636 >seq137513 Length=5763 Score = 134 bits (148), Expect = 1e-26 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 || || |||||||| || |||||||| ||||||||||| |||||||||||||| ||| | Sbjct 2362 GAGGGGAAAATGCATGGGTTTATGCGAATGTATTGGGCTAAAAAGATATTGGAGTGGACG 2303 Query 135566 GCATCG-CCTGCAGAG-GCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAG 135623 | || | |||| || | || || | || | ||||| |||||| |||| ||| Sbjct 2302 G-ATAGTCCTG-AGCGTGCCCTGAGGGATGCTCTCTTTTTGAATGATCACTATGCCCTAG 2245 Query 135624 ATGGACGCGATTCAAATGGCTACGTAGGTTGTATGTGGTCTATTTGCGGTGTACACGATC 135683 |||| ||| | ||||| | || || |||||||| ||||| || || || |||| Sbjct 2244 ATGGCAATGATGCCAATGGGTTTGTTGGGGTCATGTGGTCCATTTGTGGGGTTCATGATC 2185 Query 135684 AAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTCGCTATATGAACTATGACGGTTGTA 135743 | ||||||||||| | | | ||||| |||||||| ||||||| |||||| ||||||| Sbjct 2184 AGGGATGGAAGGAAAGGGATATTTTTGGGAAGATTCGATATATGACCTATGATGGTTGTA 2125 >seq78081 Length=4256 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || || | ||||| || || || || || || Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| ||||| || || || || || || |||||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAA 3045 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||| || || | || || | ||| |||| || |||||| Sbjct 3044 CAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCGGACTACAAC 2985 Query 27168 ATTCAAAA 27175 |||||||| Sbjct 2984 ATTCAAAA 2977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433391760010088