Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq25889 233 8e-57 seq1065 154 6e-33 seq2802 145 3e-30 >seq25889 Length=7070 Score = 233 bits (258), Expect = 8e-57 Identities = 583/880 (66%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 18202 GTAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCAC 18261 ||| ||||| | ||||| | || |||||||||||||| || | |||||||||||||| Sbjct 3754 GTACGGGCCTAAAAATCTTTCGCCATTGAAGTGAATAAGGTGGGTCGGTGCATCAGCCAC 3813 Query 18262 CCATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGG 18321 ||| |||||||||||||| || ||||| | ||| || ||||| | | || || || Sbjct 3814 CCACACCTCTGTTTCCCAAGCTATTTCCGGCAAATAACGTCCCATCAAGCTACGGTTAGG 3873 Query 18322 AAAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGC 18381 ||||||||| ||||| ||||| || || || || ||||| | | | || | ||| | Sbjct 3874 AAAAGCGGTAACATACACAAGGCCAGCAGTGGAGGTAGCAAATAACTTTGCCAACTCGCC 3933 Query 18382 ATGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTT 18441 || ||||| || ||||| || || ||||| || || || | || |||| |||||| Sbjct 3934 GTGTCGCTTTCCGTCAACAGGGCCGTGACTCGTAACGCTTTCGATCAAAAGCAACCAGTT 3993 Query 18442 TTTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACC 18501 || || || || | | || |||||||| || ||||| ||| || || || Sbjct 3994 CTTTTGTGTGAAGTGCAAAATGACGTCTGGCATCTTGCCGTGACTATCTACTGTCACGCC 4053 Query 18502 TAGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCGCCAGTGTCGCCAGCATA 18561 ||| | || ||| | | || || |||| | || | || || || || ||||| Sbjct 4054 CAGCTCTGCGAGCTTTTCTTCATCAAAAAAGCCTAATTTCGCACCTGTATCACCCGCATA 4113 Query 18562 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 18621 | ||| ||| || || ||||| ||||| ||||| || || || | |||||| Sbjct 4114 TATTAGCTGGCTGTTTGGTGCGAAACGCGGGGCAAAGTCTTCAATAATTTGTCTGATAAG 4173 Query 18622 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 18681 ||||||||| ||||| | | | | || | || ||| | || || || Sbjct 4174 TTCGCTGTGATCGCCAGCTGTCAAAACCAATTTTTTACCATCAGATGTAGTTACTGGTAT 4233 Query 18682 ACGATTCTGTTCGCGCTCCTTAGCATAGCGGGTAACCAGCGTTTCACGCTCGGCTAAATA 18741 | | || || |||||| ||||||| | ||| || ||||| | | | || Sbjct 4234 GAGTGTTTGCTCTCGCTCCATAGCATACTTAGCAACGAGTGTTTCTATATTTTCAAGATG 4293 Query 18742 GGTTG-CAAGGCTATCGTGCCATGCCGGGCTGCCGAAAGTGCGTAGCATGGACAGAGCAG 18800 | | |||||| | | |||| | | ||| | | || | || | || Sbjct 4294 TGCGGCCAAGGC-ACTTTCCCATTCACCCGTCCCGTATTTTTTAAGAAGCTCAAGCGAAG 4352 Query 18801 CAGGTTCGATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGGCTTGTCCGGAT 18860 | || || |||||||| || ||||| || ||||| ||||| ||||| |||||||| || | Sbjct 4353 CTGGCTCAATCTGATATACGGCCTTTGGACTGTTTACTGGACGATCTGGCTTGTCTGGGT 4412 Query 18861 TGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCGGAATGTCTCAC 18920 ||||||| || | || ||| |||| ||||| ||||| | || || || || ||||||| Sbjct 4413 TGTAGAGCGCCAAGCCTGCATCGCAAAACTGGTGCATGGTTTGACGCCGAAACGTCTCAC 4472 Query 18921 GAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCATGATTGGTGTAA 18980 | | || || || ||| ||| || || | | | ||||| |||| || || |||| Sbjct 4473 GGCTGTTTGGCGCATAGTGCTTCCCATATTCTTGACTGGCCCAAGTCATCATAGGGGTAA 4532 Query 18981 TGCCCACAAGCGGATTTTCCGCGTCGGCCCATGCTTTT-CCCGGTGTGAGGTTCAGGAGT 19039 |||||| || || ||| || || | ||| |||||| || || | ||||| || Sbjct 4533 TGCCCAGCAGTGGGTTTGAAGCCTCTGACCA-GCTTTTATTGGGGGTCATGTTCAACAGA 4591 Query 19040 GCCAGCAAACACAAAGCAGAACGCTCATTCTGCTGCGCTC 19079 | ||| | || || || ||||||||||| || || |||| Sbjct 4592 GACAGAAGGCATAATGCCGAACGCTCATTTTGTTGTGCTC 4631 >seq1065 Length=12871 Score = 154 bits (170), Expect = 6e-33 Identities = 518/797 (65%), Gaps = 26/797 (3%) Strand=Plus/Plus Query 18203 TAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCACC 18262 || ||||||||||| ||||| || || || ||||||||||| | |||| || || | Sbjct 8381 TAAGGGCCAAGAAACCGCACACCATTAAAATGAATAAGATGGGTTGGTGAGTCGGCACAC 8440 Query 18263 CATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGGA 18322 ||||| ||||| ||||||| ||||| | ||||| ||||| || |||| ||| Sbjct 8441 CATACTTCTGTCTCCCATGAAATTTCGCTTAGATACTTGCCCATAATTTTTCGATCGGGA 8500 Query 18323 AAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGCA 18382 || ||||| ||||| ||||| || | || || | | ||| || |||||||||| Sbjct 8501 AACGCGGTGACATACACAAGCCCAGGTGAAGAATCAGAAAAAAGTTCGGCAAGCTCATTG 8560 Query 18383 TGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTTT 18442 || || || ||||||| || || ||||| |||||||| |||| | || ||||||| | Sbjct 8561 TGTCGTTTAGCATCAACAGGCCCGTGACTAGTGACAGATTCAATTAATAATAGCCAGTCT 8620 Query 18443 TTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACCT 18502 ||| ||| | ||||| ||||| |||||||| || ||| || ||| || || Sbjct 8621 TTCTGCCCAAAGTAGAGCACTACATCAGGCATTTTCCCATGTTGGTCTACAGTTACGCCA 8680 Query 18503 AGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCG-CCAGTGTCGCCAGCATA 18561 | | || || | | | || || | |||| |||||| | || || || ||| | || Sbjct 8681 AATTCTGCTAGGCGCGTTGACTCAAAAT-GCCCAACTTTTTGCCCCGTATCACCAACGTA 8739 Query 18562 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 18621 | | | | | | || ||||| ||||| ||||| || | || ||| | ||||| Sbjct 8740 TATAACCTCTGAAGCAGGGGCAAAGCGTGGAGCGAAATCTGCGATGATGTCTTTAATAAG 8799 Query 18622 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 18681 | ||| || ||| || | | | || | | || ||||||||| |||||| || Sbjct 8800 CTGGCTATGAATGCCAGGTGTTAAAGCAATCTCTTTTCCTCCAGCAATTTGAACAGGAAT 8859 Query 18682 ACGATTCTGTTCGCGCTCCTTAGC----ATAGCGGGTAACCAGCGTTTCACGCTCGGCTA 18737 | | ||| || | || || | |||| | |||||||| || | | | Sbjct 8860 CATCTGCATTTCTCGATGTTTTGCCCATTTTGCGG----CAAGCGTTTCTTGCCCTTCAA 8915 Query 18738 AATAGGTTG-CAAG--GCTATCGTGCCATGC--CGGGCTGCCGAAAGTGCGTAGCATGGA 18792 ||| |||| |||| ||| || ||| | | | | ||| | || | ||| Sbjct 8916 GATACGTTGCCAAGATGCTTTC---CCAATCATCAGCC--CCGTACGT---TTTTATGAC 8967 Query 18793 CAGAGCAGCAGGTTC---GATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGG 18849 | | ||| || | ||||||| ||| || || || || || | ||| |||| Sbjct 8968 CTCAAAAGCCTCGTCACTCACCTGATAACAAGCTTTTGGACTATTAACGGCACGAGCGGG 9027 Query 18850 CTTGTCCGGATTGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCG 18909 | ||| |||||||| | ||| | |||||| | ||| |||||||| | || || || Sbjct 9028 ATCGTCAGGATTGTATACGGCAATTCCAGCTTCAACGAATTGATGCATCGTTTGACGACG 9087 Query 18910 GAATGTCTCACGAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCAT 18969 || |||||||| ||||| || || || | |||||| || || || | | ||| Sbjct 9088 AAAAGTCTCACGCGTATTTGGCGCATATTCTCGGCCGTAATGTTCTCGGCAATATTCCAT 9147 Query 18970 GATTGGTGTAATGCCCA 18986 |||||| || || |||| Sbjct 9148 GATTGGGGTTATACCCA 9164 >seq2802 Length=2961 Score = 145 bits (160), Expect = 3e-30 Identities = 296/435 (68%), Gaps = 10/435 (2%) Strand=Plus/Minus Query 33028 AGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCA 33087 || |||||||||||||| ||||||| ||||| | |||||||| ||| || || || Sbjct 1194 AGTAATCGTCGATTGTTGAACCAGTCTACCCAGTTCAGTGTGGCATATTCAACATCATCA 1135 Query 33088 CGGTTTTTCCA--GCTCTT-ACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTC 33144 |||||| || ||| | | | |||||||| ||||| ||||| |||| || | Sbjct 1134 ATACCTTTCCATGGCCCTTTATGCCGAATTACCTCAGCTTTATAAAGCGCATTAATTGCC 1075 Query 33145 TCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCT 33204 |||||||| || ||||||||||| || || | || || ||| || | | | || Sbjct 1074 TCAGCCATTGCATTGTCATACGAATCACCGATGCTACCCACTGACGCTTCAATTTCAGCA 1015 Query 33205 TCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGG 33264 || | ||| || || || | ||||| |||||| ||| | |||| |||||| Sbjct 1014 TCAGCCAATCGTTCGGTGTAACGGATTGACAGGTACTGACTGCCGTGATCGGAGTGATGA 955 Query 33265 ATGGTGCCAGACGGACGA---CGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAAT 33321 || || | | | | | ||| | ||||||||||| ||||||||||| | Sbjct 954 ATCAACCCTTTCTCAGGCTTCCTGCACCAAATTGCCTGCTCCAGTGCATCCAGCACCAGC 895 Query 33322 GTCGTTTCCATAGACGATGAG--ACCCGCCACCCCACGATGTATCCGGCAAACACATCAA 33379 | ||||||| ||| ||| |||||||| || ||||| || | | | | ||||| | Sbjct 894 GGAGTTTCCAGCGAC--TGACTCACCCGCCAACCTACGATATAACGTGAATAGACATCGA 837 Query 33380 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 33439 | | ||| || |||||||| || || ||| ||| || ||||| | ||||||||||| Sbjct 836 TAACAAATGCGACATAGACAAAACCTGACCAGGTGGGGATATAAGTTATATCAGCCACCC 777 Query 33440 ACAGCTGGTCAGGTC 33454 | ||||| | ||||| Sbjct 776 AAAGCTGATTAGGTC 762 Score = 84.2 bits (92), Expect = 9e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 33847 GGCGGTCGAACTCCGCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGC 33906 ||||||||| |||||||| |||||||||||| || |||| ||| | || || || | Sbjct 363 GGCGGTCGAGCTCCGCCTGCGCAAAATAAGCAGAGGCCTTGCGTAATATCTCATTGGCAC 304 Query 33907 GGCGCAGTTCACGATTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTC 33955 |||||| |||| |||| || |||||||| |||| ||| | | ||| || Sbjct 303 GGCGCAATTCAAGATTCTCGCGTTCCAGGGCTTTGAGATGTTCACGCTC 255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210189247922016