Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq25889 233 7e-57 seq1065 154 6e-33 >seq25889 Length=7070 Score = 233 bits (258), Expect = 7e-57 Identities = 583/880 (66%), Gaps = 4/880 (0%) Strand=Plus/Minus Query 18403 GAGCGCAGCAGAATGAGCGTTCTGCTTTGTGTTTGCTGGCACTCCTGAACCTCACACCGG 18462 |||| || || ||||||||||| || || || | ||| | || ||||| | || || Sbjct 4631 GAGCACAACAAAATGAGCGTTCGGCATTATGCCTTCTGTCTCTGTTGAACATGACCCCCA 4572 Query 18463 G-AAAAGCATGGGCCGACGCGGAAAATCCGCTTGTGGGCATTACACCAATCATGAATTGG 18521 |||||| ||| | || || ||| || || |||||||||| || || |||| |||| Sbjct 4571 ATAAAAGC-TGGTCAGAGGCTTCAAACCCACTGCTGGGCATTACCCCTATGATGACTTGG 4513 Query 18522 GTTCGGGAGCACTACGGCAAGGTCTACGCACCCAATACTCGTGAGACATTCCGCCGCCAG 18581 | | | | || || ||| ||| || || || | |||||||| || || || || Sbjct 4512 GCCAGTCAAGAATATGGGAAGCACTATGCGCCAAACAGCCGTGAGACGTTTCGGCGTCAA 4453 Query 18582 TCTATGCATCAGTTCTGCGCTGCTGGAGTAGCCCTCTACAATCCGGACAAGCCCGATCGC 18641 | ||||| ||||| |||| ||| || | || |||||||| || |||||||| ||||| Sbjct 4452 ACCATGCACCAGTTTTGCGATGCAGGCTTGGCGCTCTACAACCCAGACAAGCCAGATCGT 4393 Query 18642 CCAGTGAACAGCCCGAAGGCTGTTTATCAGATCGAACCTGCTGCTCTGTCCATGCTACGC 18701 ||||| ||||| || ||||| || |||||||| || || ||| | || | || Sbjct 4392 CCAGTAAACAGTCCAAAGGCCGTATATCAGATTGAGCCAGCTTCGCTTGAGCTTCTTAAA 4333 Query 18702 ACTTTCGGCAGCCCGGCATGGCACGATAGCCTTG-CAACCTATTTAGCCGAGCGTGAAAC 18760 | | ||| | | |||| | | |||||| | | || | | | ||||| Sbjct 4332 AAATACGGGACGGGTGAATGGGAAAGT-GCCTTGGCCGCACATCTTGAAAATATAGAAAC 4274 Query 18761 GCTGGTTACCCGCTATGCTAAGGAGCGCGAACAGAATCGTATCCCTGTTGAAATTGCTGC 18820 || ||| | ||||||| |||||| || || | | || || || | ||| Sbjct 4273 ACTCGTTGCTAAGTATGCTATGGAGCGAGAGCAAACACTCATACCAGTAACTACATCTGA 4214 Query 18821 GGGCCAGCAAATAACCCTCAGTCCCGGCGAGCACAGCGAACTTATCCGTGCCATAATAGA 18880 || | || | | | | ||||| ||||||||||||||| | || || || Sbjct 4213 TGGTAAAAAATTGGTTTTGACAGCTGGCGATCACAGCGAACTTATCAGACAAATTATTGA 4154 Query 18881 GGACTTCGCCCCACGTTTTGCTCCGGGTAGCGTGCTGGTCTATGCTGGCGACACTGGCGA 18940 ||||| ||||| ||||| || || ||| ||| | ||||| || || || || | Sbjct 4153 AGACTTTGCCCCGCGTTTCGCACCAAACAGCCAGCTAATATATGCGGGTGATACAGGTGC 4094 Query 18941 AAAGTGGGGCTACTTCGACGCTCCACTGCTGGCCGGGCTAGGTGTTGATGTGGATTCACA 19000 || | |||| || || | | ||| || | ||| || || || ||| || Sbjct 4093 GAAATTAGGCTTTTTTGATGAAGAAAAGCTCGCAGAGCTGGGCGTGACAGTAGATAGTCA 4034 Query 19001 CGGTAAAATGCCAGATGTGGTGCTACATTTTACTGCGAAAAACTGGCTGCTACTGGTTGA 19060 ||| || |||||||| || | | || || || || |||||| |||| || | || Sbjct 4033 CGGCAAGATGCCAGACGTCATTTTGCACTTCACACAAAAGAACTGGTTGCTTTTGATCGA 3974 Query 19061 GTCTGTCACCAGTCATGGACCGGTTGATGGGAAGCGGCATGCTGAGCTTGCCAKGCTGTT 19120 || || ||||| || || ||||| || ||||| || | ||| | || | | | || Sbjct 3973 AAGCGTTACGAGTCACGGCCCTGTTGACGGAAAGCGACACGGCGAGTTGGCAAAGTTATT 3914 Query 19121 TGCCGGATCAACAGCCGGACTTGTCTATGTGACCGCTTTTCCAAATCGCTCCATCATGGG 19180 ||| || || || || ||||| ||||| ||||||||||| || || | | ||||| Sbjct 3913 TGCTACCTCCACTGCTGGCCTTGTGTATGTTACCGCTTTTCCTAACCGTAGCTTGATGGG 3854 Query 19181 GCGATATCTTGGTGAAATCGCATGGGAAACAGAGGTATGGGTGGCTGATGCACCTTCTCA 19240 || ||| | ||||| || |||||||||||||| ||||||||||||||||| | || Sbjct 3853 ACGTTATTTGCCGGAAATAGCTTGGGAAACAGAGGTGTGGGTGGCTGATGCACCGACCCA 3794 Query 19241 TCTTATTCACTTCAACGGAGTGCGATTTCTTGGCCCCTAC 19280 |||||||||||||| || | ||||| | ||||| ||| Sbjct 3793 CCTTATTCACTTCAATGGCGAAAGATTTTTAGGCCCGTAC 3754 >seq1065 Length=12871 Score = 154 bits (170), Expect = 6e-33 Identities = 518/797 (65%), Gaps = 26/797 (3%) Strand=Plus/Minus Query 18496 TGGGCATTACACCAATCATGAATTGGGTTCGGGAGCACTACGGCAAGGTCTACGCACCCA 18555 |||| || || ||||||||| | | || || || |||||| | || || || | Sbjct 9164 TGGGTATAACCCCAATCATGGAATATTGCCGAGAACATTACGGCCGAGAATATGCGCCAA 9105 Query 18556 ATACTCGTGAGACATTCCGCCGCCAGTCTATGCATCAGTTCTGCGCTGCTGGAGTAGCCC 18615 |||| |||||||| || || || || | |||||||| ||| | |||||| | ||| Sbjct 9104 ATACGCGTGAGACTTTTCGTCGTCAAACGATGCATCAATTCGTTGAAGCTGGAATTGCCG 9045 Query 18616 TCTACAATCCGGACAAGCCCGATCGCCCAGTGAACAGCCCGAAGGCTGTTTATCAGATC- 18674 | |||||||| ||| | |||| ||| | || || || || || ||| ||||||| | Sbjct 9044 TATACAATCCTGACGATCCCGCTCGTGCCGTTAATAGTCCAAAAGCTTGTTATCAGGTGA 8985 Query 18675 --GAACCTGCTGCTCTGTCCATGCTACGCACTTTCGGCAGCCCG--GCATGGCACGATAG 18730 || ||| | | ||| | || | ||| | | | | ||| || || Sbjct 8984 GTGACGAGGCTTTTGAGGTCATAAAA---ACGTACGG--GGCTGATGATTGG---GAAAG 8933 Query 18731 C--CTTG-CAACCTATTTAGCCGAGCGTGAAACGCTGGTTACCCGCTAT----GCTAAGG 18783 | |||| |||| ||| | | | || |||||||| | |||| | || || Sbjct 8932 CATCTTGGCAACGTATCTTGAAGGGCAAGAAACGCTTG----CCGCAAAATGGGCAAAAC 8877 Query 18784 AGCGCGAACAGAATCGTATCCCTGTTGAAATTGCTGCGGGCCAGCAAATAACCCTCAGTC 18843 | || ||| | | || |||||| ||||||||| || | | || | | | | Sbjct 8876 ATCGAGAAATGCAGATGATTCCTGTTCAAATTGCTGGAGGAAAAGAGATTGCTTTAACAC 8817 Query 18844 CCGGCGAGCACAGCGAACTTATCCGTGCCATAATAGAGGACTTCGCCCCACGTTTTGCTC 18903 | ||| || ||| | ||||| | ||| || | || ||||| ||||| ||||| | Sbjct 8816 CTGGCATTCATAGCCAGCTTATTAAAGACATCATCGCAGATTTCGCTCCACGCTTTGCCC 8757 Query 18904 CGGGTAGCGTGCTGGTCTATGCTGGCGACACTGG-CGAAAAGTGGGGCTACTTCGACGCT 18962 | | | | | | | || | ||| || || || | |||||| |||| | || || | Sbjct 8756 CTGCTTCAGAGGTTATATACGTTGGTGATACGGGGCAAAAAGTTGGGC-ATTTTGAGTCA 8698 Query 18963 CCACTGCTGGCCGGGCTAGGTGTTGATGTGGATTCACACGGTAAAATGCCAGATGTGGTG 19022 | | || || | | || || ||| || ||| || |||||||| ||||| ||| Sbjct 8697 ACGCGCCTAGCAGAATTTGGCGTAACTGTAGACCAACATGGGAAAATGCCTGATGTAGTG 8638 Query 19023 CTACATTTTACTGCGAAAAACTGGCTGCTACTGGTTGAGTCTGTCACCAGTCATGGACCG 19082 || | ||| |||| ||||||| || | |||| |||||||| ||||| || || Sbjct 8637 CTCTACTTTGGGCAGAAAGACTGGCTATTATTAATTGAATCTGTCACTAGTCACGGGCCT 8578 Query 19083 GTTGATGGGAAGCGGCATGCTGAGCTTGCCAKGCTGTTTGCCGGATCAACAGCCGGACTT 19142 ||||||| || || || |||||||||| || ||| | | || || | || ||| Sbjct 8577 GTTGATGCTAAACGACACAATGAGCTTGCCGAACTTTTTTCTGATTCTTCACCTGGGCTT 8518 Query 19143 GTCTATGTGACCGCTTTTCCAAATCGCTCCATCATGGGGCGATATCTTGGTGAAATCGCA 19202 || ||||| ||||| ||||| |||| || ||||| ||||| | ||||| || Sbjct 8517 GTGTATGTCACCGCGTTTCCCGATCGAAAAATTATGGGCAAGTATCTAAGCGAAATTTCA 8458 Query 19203 TGGGAAACAGAGGTATGGGTGGCTGATGCACCTTCTCATCTTATTCACTTCAACGGAGTG 19262 ||||| ||||| |||||| || || |||| | ||||||||||| || || || ||| Sbjct 8457 TGGGAGACAGAAGTATGGTGTGCCGACTCACCAACCCATCTTATTCATTTTAATGGTGTG 8398 Query 19263 CGATTTCTTGGCCCCTA 19279 || ||||||||||| || Sbjct 8397 CGGTTTCTTGGCCCTTA 8381 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194521421014224