Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq25889 233 8e-57 seq1065 154 6e-33 >seq25889 Length=7070 Score = 233 bits (258), Expect = 8e-57 Identities = 583/880 (66%), Gaps = 4/880 (0%) Strand=Plus/Plus Query 16483 GTAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCAC 16542 ||| ||||| | ||||| | || |||||||||||||| || | |||||||||||||| Sbjct 3754 GTACGGGCCTAAAAATCTTTCGCCATTGAAGTGAATAAGGTGGGTCGGTGCATCAGCCAC 3813 Query 16543 CCATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGG 16602 ||| |||||||||||||| || ||||| | ||| || ||||| | | || || || Sbjct 3814 CCACACCTCTGTTTCCCAAGCTATTTCCGGCAAATAACGTCCCATCAAGCTACGGTTAGG 3873 Query 16603 AAAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGC 16662 ||||||||| ||||| ||||| || || || || ||||| | | | || | ||| | Sbjct 3874 AAAAGCGGTAACATACACAAGGCCAGCAGTGGAGGTAGCAAATAACTTTGCCAACTCGCC 3933 Query 16663 ATGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTT 16722 || ||||| || ||||| || || ||||| || || || | || |||| |||||| Sbjct 3934 GTGTCGCTTTCCGTCAACAGGGCCGTGACTCGTAACGCTTTCGATCAAAAGCAACCAGTT 3993 Query 16723 TTTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACC 16782 || || || || | | || |||||||| || ||||| ||| || || || Sbjct 3994 CTTTTGTGTGAAGTGCAAAATGACGTCTGGCATCTTGCCGTGACTATCTACTGTCACGCC 4053 Query 16783 TAGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCGCCAGTGTCGCCAGCATA 16842 ||| | || ||| | | || || |||| | || | || || || || ||||| Sbjct 4054 CAGCTCTGCGAGCTTTTCTTCATCAAAAAAGCCTAATTTCGCACCTGTATCACCCGCATA 4113 Query 16843 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 16902 | ||| ||| || || ||||| ||||| ||||| || || || | |||||| Sbjct 4114 TATTAGCTGGCTGTTTGGTGCGAAACGCGGGGCAAAGTCTTCAATAATTTGTCTGATAAG 4173 Query 16903 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 16962 ||||||||| ||||| | | | | || | || ||| | || || || Sbjct 4174 TTCGCTGTGATCGCCAGCTGTCAAAACCAATTTTTTACCATCAGATGTAGTTACTGGTAT 4233 Query 16963 ACGATTCTGTTCGCGCTCCTTAGCATAGCGGGTAACCAGCGTTTCACGCTCGGCTAAATA 17022 | | || || |||||| ||||||| | ||| || ||||| | | | || Sbjct 4234 GAGTGTTTGCTCTCGCTCCATAGCATACTTAGCAACGAGTGTTTCTATATTTTCAAGATG 4293 Query 17023 GGTTG-CAAGGCTATCGTGCCATGCCGGGCTGCCGAAAGTGCGTAGCATGGACAGAGCAG 17081 | | |||||| | | |||| | | ||| | | || | || | || Sbjct 4294 TGCGGCCAAGGC-ACTTTCCCATTCACCCGTCCCGTATTTTTTAAGAAGCTCAAGCGAAG 4352 Query 17082 CAGGTTCGATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGGCTTGTCCGGAT 17141 | || || |||||||| || ||||| || ||||| ||||| ||||| |||||||| || | Sbjct 4353 CTGGCTCAATCTGATATACGGCCTTTGGACTGTTTACTGGACGATCTGGCTTGTCTGGGT 4412 Query 17142 TGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCGGAATGTCTCAC 17201 ||||||| || | || ||| |||| ||||| ||||| | || || || || ||||||| Sbjct 4413 TGTAGAGCGCCAAGCCTGCATCGCAAAACTGGTGCATGGTTTGACGCCGAAACGTCTCAC 4472 Query 17202 GAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCATGATTGGTGTAA 17261 | | || || || ||| ||| || || | | | ||||| |||| || || |||| Sbjct 4473 GGCTGTTTGGCGCATAGTGCTTCCCATATTCTTGACTGGCCCAAGTCATCATAGGGGTAA 4532 Query 17262 TGCCCACAAGCGGATTTTCCGCGTCGGCCCATGCTTTT-CCCGGTGTGAGGTTCAGGAGT 17320 |||||| || || ||| || || | ||| |||||| || || | ||||| || Sbjct 4533 TGCCCAGCAGTGGGTTTGAAGCCTCTGACCA-GCTTTTATTGGGGGTCATGTTCAACAGA 4591 Query 17321 GCCAGCAAACACAAAGCAGAACGCTCATTCTGCTGCGCTC 17360 | ||| | || || || ||||||||||| || || |||| Sbjct 4592 GACAGAAGGCATAATGCCGAACGCTCATTTTGTTGTGCTC 4631 >seq1065 Length=12871 Score = 154 bits (170), Expect = 6e-33 Identities = 518/797 (65%), Gaps = 26/797 (3%) Strand=Plus/Plus Query 16484 TAGGGGCCAAGAAATCGCACTCCGTTGAAGTGAATAAGATGAGAAGGTGCATCAGCCACC 16543 || ||||||||||| ||||| || || || ||||||||||| | |||| || || | Sbjct 8381 TAAGGGCCAAGAAACCGCACACCATTAAAATGAATAAGATGGGTTGGTGAGTCGGCACAC 8440 Query 16544 CATACCTCTGTTTCCCATGCGATTTCACCAAGATATCGCCCCATGATGGAGCGATTTGGA 16603 ||||| ||||| ||||||| ||||| | ||||| ||||| || |||| ||| Sbjct 8441 CATACTTCTGTCTCCCATGAAATTTCGCTTAGATACTTGCCCATAATTTTTCGATCGGGA 8500 Query 16604 AAAGCGGTCACATAGACAAGTCCGGCTGTTGATCCGGCAAACAGCCTGGCAAGCTCAGCA 16663 || ||||| ||||| ||||| || | || || | | ||| || |||||||||| Sbjct 8501 AACGCGGTGACATACACAAGCCCAGGTGAAGAATCAGAAAAAAGTTCGGCAAGCTCATTG 8560 Query 16664 TGCCGCTTCCCATCAACCGGTCCATGACTGGTGACAGACTCAACCAGTAGCAGCCAGTTT 16723 || || || ||||||| || || ||||| |||||||| |||| | || ||||||| | Sbjct 8561 TGTCGTTTAGCATCAACAGGCCCGTGACTAGTGACAGATTCAATTAATAATAGCCAGTCT 8620 Query 16724 TTCGCAGTAAAATGTAGCACCACATCTGGCATTTTACCGTGTGAATCCACATCAACACCT 16783 ||| ||| | ||||| ||||| |||||||| || ||| || ||| || || Sbjct 8621 TTCTGCCCAAAGTAGAGCACTACATCAGGCATTTTCCCATGTTGGTCTACAGTTACGCCA 8680 Query 16784 AGCCCGGCCAGCAGTGGAGCGTCGAAGTAGCCCCACTTTTCG-CCAGTGTCGCCAGCATA 16842 | | || || | | | || || | |||| |||||| | || || || ||| | || Sbjct 8681 AATTCTGCTAGGCGCGTTGACTCAAAAT-GCCCAACTTTTTGCCCCGTATCACCAACGTA 8739 Query 16843 GACCAGCACGCTACCCGGAGCAAAACGTGGGGCGAAGTCCTCTATTATGGCACGGATAAG 16902 | | | | | | || ||||| ||||| ||||| || | || ||| | ||||| Sbjct 8740 TATAACCTCTGAAGCAGGGGCAAAGCGTGGAGCGAAATCTGCGATGATGTCTTTAATAAG 8799 Query 16903 TTCGCTGTGCTCGCCGGGACTGAGGGTTATTTGCTGGCCCGCAGCAATTTCAACAGGGAT 16962 | ||| || ||| || | | | || | | || ||||||||| |||||| || Sbjct 8800 CTGGCTATGAATGCCAGGTGTTAAAGCAATCTCTTTTCCTCCAGCAATTTGAACAGGAAT 8859 Query 16963 ACGATTCTGTTCGCGCTCCTTAGC----ATAGCGGGTAACCAGCGTTTCACGCTCGGCTA 17018 | | ||| || | || || | |||| | |||||||| || | | | Sbjct 8860 CATCTGCATTTCTCGATGTTTTGCCCATTTTGCGG----CAAGCGTTTCTTGCCCTTCAA 8915 Query 17019 AATAGGTTG-CAAG--GCTATCGTGCCATGC--CGGGCTGCCGAAAGTGCGTAGCATGGA 17073 ||| |||| |||| ||| || ||| | | | | ||| | || | ||| Sbjct 8916 GATACGTTGCCAAGATGCTTTC---CCAATCATCAGCC--CCGTACGT---TTTTATGAC 8967 Query 17074 CAGAGCAGCAGGTTC---GATCTGATAAACAGCCTTCGGGCTGTTCACTGGGCGATCGGG 17130 | | ||| || | ||||||| ||| || || || || || | ||| |||| Sbjct 8968 CTCAAAAGCCTCGTCACTCACCTGATAACAAGCTTTTGGACTATTAACGGCACGAGCGGG 9027 Query 17131 CTTGTCCGGATTGTAGAGGGCTACTCCAGCAGCGCAGAACTGATGCATAGACTGGCGGCG 17190 | ||| |||||||| | ||| | |||||| | ||| |||||||| | || || || Sbjct 9028 ATCGTCAGGATTGTATACGGCAATTCCAGCTTCAACGAATTGATGCATCGTTTGACGACG 9087 Query 17191 GAATGTCTCACGAGTATTGGGTGCGTAGACCTTGCCGTAGTGCTCCCGAACCCAATTCAT 17250 || |||||||| ||||| || || || | |||||| || || || | | ||| Sbjct 9088 AAAAGTCTCACGCGTATTTGGCGCATATTCTCGGCCGTAATGTTCTCGGCAATATTCCAT 9147 Query 17251 GATTGGTGTAATGCCCA 17267 |||||| || || |||| Sbjct 9148 GATTGGGGTTATACCCA 9164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200291386620512