Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq157813 116 1e-21 seq262960 102 2e-17 >seq157813 Length=1168 Score = 116 bits (128), Expect = 1e-21 Identities = 268/401 (67%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 || ||||||||| | |||| ||| ||||| | | |||||| | ||||||||||| Sbjct 569 GGAACCCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTAGTGCATTATCCCAGCAA 510 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 || ||||||| ||||| ||||| | || ||||| | ||| || || |||| || | | Sbjct 509 TTACCACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAGCAATTGCCTAAATTTC 450 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGG 39732 ||||||||| ||||||||||| || || ||||| ||||| ||| || || | Sbjct 449 AAGCTCGTATATTGACTGCCTTGGTCTGAATGAAACATTACCCCTCTGGGTTTTCCCCTA 390 Query 39733 GTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGACAT 39791 || | ||| |||| || || || || ||| ||| ||| || | || || Sbjct 389 TGTTGATAAGCCTTTTCAAGGGCGTTGATTACCAGCGATGC-GTCTGGGTGCATTGATAT 331 Query 39792 GGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 39851 | || || | | | |||| | | ||| | || |||||| | ||| |||||| Sbjct 330 CGATCAACCGATAACTCGCCGTGCGTATAAGTCAATAATAACGGCTAAGTAGATCCAGCG 271 Query 39852 CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGC 39911 |||||| |||||||||||| | ||| || ||||| || || || ||||| || | Sbjct 270 ACTACCCGCCCAGATATAGGTTATATCGCCACACCAAACGGAGTTAGGGTCGGTGACAGT 211 Query 39912 GAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCAT 39952 |||| || | || |||||| || ||| |||||| Sbjct 210 AAACTTTCGAGCCAGTGCGTTAGGAATCTCAAGTCGTTCAT 170 Score = 116 bits (128), Expect = 1e-21 Identities = 268/401 (67%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 || ||||||||| | |||| ||| ||||| | | |||||| | ||||||||||| Sbjct 569 GGAACCCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTAGTGCATTATCCCAGCAA 510 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 || ||||||| ||||| ||||| | || ||||| | ||| || || |||| || | | Sbjct 509 TTACCACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAGCAATTGCCTAAATTTC 450 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCCGACGGGCTTACCACGG 17107 ||||||||| ||||||||||| || || ||||| ||||| ||| || || | Sbjct 449 AAGCTCGTATATTGACTGCCTTGGTCTGAATGAAACATTACCCCTCTGGGTTTTCCCCTA 390 Query 17108 GTTTCCCATGCCATTTCCAGTGCTTTCATGGTAAGC-CTGCTGTCCGGCGAGAACGACAT 17166 || | ||| |||| || || || || ||| ||| ||| || | || || Sbjct 389 TGTTGATAAGCCTTTTCAAGGGCGTTGATTACCAGCGATGC-GTCTGGGTGCATTGATAT 331 Query 17167 GGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGCG 17226 | || || | | | |||| | | ||| | || |||||| | ||| |||||| Sbjct 330 CGATCAACCGATAACTCGCCGTGCGTATAAGTCAATAATAACGGCTAAGTAGATCCAGCG 271 Query 17227 CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGGC 17286 |||||| |||||||||||| | ||| || ||||| || || || ||||| || | Sbjct 270 ACTACCCGCCCAGATATAGGTTATATCGCCACACCAAACGGAGTTAGGGTCGGTGACAGT 211 Query 17287 GAACTGCCGTTCAAGGTAGTTAGGGATAGCAACATGTTCAT 17327 |||| || | || |||||| || ||| |||||| Sbjct 210 AAACTTTCGAGCCAGTGCGTTAGGAATCTCAAGTCGTTCAT 170 >seq262960 Length=559 Score = 102 bits (112), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16928 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 16987 || ||||||||| | |||| ||| ||||| | | |||||||| ||||||||||| Sbjct 392 GGAACCCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTGGTGCATTATCCCAGCAA 451 Query 16988 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 17047 || ||||||| ||||| ||||| | || ||||| | ||| | || |||| || | Sbjct 452 TTACCACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAACAATTGCCTAAATCTC 511 Query 17048 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCC 17091 ||||||||| |||||||||||||| || ||||| ||||| Sbjct 512 AAGCTCGTATATTGACTGCCTTGATCTGAATGAAACATTACCCC 555 Score = 102 bits (112), Expect = 2e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39553 GGCACCCATTCGTTCTTCAGACTCCTGAAGAAGCGCTCCATTGGGCTGTTATCCCAGCAG 39612 || ||||||||| | |||| ||| ||||| | | |||||||| ||||||||||| Sbjct 392 GGAACCCATTCGGTTTTCAAACTTCTGAATACTCTTTCCATTGGTGCATTATCCCAGCAA 451 Query 39613 TTTCCACGCCGACTCATACTCTGCCTGATCCGGTATCTCCACAGTAACTGCCGGAACTGC 39672 || ||||||| ||||| ||||| | || ||||| | ||| | || |||| || | Sbjct 452 TTACCACGCCTGCTCATGCTCTGTTTAATGCGGTAGCGCCATAACAATTGCCTAAATCTC 511 Query 39673 CTGCTCGTATAATGACTGCCTTGATCGCTGTGGAACATCACCCC 39716 ||||||||| |||||||||||||| || ||||| ||||| Sbjct 512 AAGCTCGTATATTGACTGCCTTGATCTGAATGAAACATTACCCC 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131707046049600