Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq214504 96.9 1e-15 seq76541 82.4 3e-11 >seq214504 Length=2501 Score = 96.9 bits (106), Expect = 1e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 4920 TCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATCGACCGCATCAACG 4979 |||||||| | || | || | ||||| || || || | ||||||||||| ||||| Sbjct 1243 TCATGCGCGCGACATATGATTATGCCGAACCAGGTGTGATTTTCATCGACCGTATCAATC 1302 Query 4980 AGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCGTGCGGCGAGCAGC 5039 | | ||||||||| || || ||||||| ||| ||||| || ||||| || || ||||| | Sbjct 1303 AAAAGAACAACCTGCATTATTGCGAGAGCATTGCGGCAACAAACCCCTGTGGGGAGCAAC 1362 Query 5040 CGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAAC 5080 | ||||||| | || ||||| || | || || ||||| Sbjct 1363 CATTGCCACCTTATGGTGCCTGTTTGTTGGGATCTATCAAC 1403 >seq76541 Length=11138 Score = 82.4 bits (90), Expect = 3e-11 Identities = 132/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 4899 CCAACGAGCTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCC 4958 |||| |||||||||||||| | || | ||||| |||| || || || || || Sbjct 4818 CCAAAGAGCTGTGGGACGCCATTATTCAAAACACCTACGACTACGCTGAACCCGGTGTGA 4759 Query 4959 TGTTCATCGACCGCATCAACG-AGATGAACAACCTCCACTACTGCGAGACCATCGCGGCG 5017 | ||||| ||||||||||| ||| ||||||||||||| | || || ||||| || Sbjct 4758 TCTTCATTGACCGCATCAATTCAGA-GAACAACCTCCACGCCGTGGAAACTATCGCAGCA 4700 Query 5018 ACCAACCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTC 5077 || ||||| || || ||||| || |||| || | ||| || || || | || || | Sbjct 4699 ACGAACCCATGTGGTGAGCAACCTTTGCCTCCATACGGTGCTTGTTTGTTGGGATCAGTG 4640 Query 5078 AACCTGG 5084 ||| ||| Sbjct 4639 AACTTGG 4633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186874120858608