Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq30887 374 3e-99 seq274101 228 3e-55 seq174168 140 1e-28 seq39572 95.1 4e-15 seq271562 86.0 2e-12 >seq30887 Length=1222 Score = 374 bits (414), Expect = 3e-99 Identities = 768/1133 (68%), Gaps = 14/1133 (1%) Strand=Plus/Minus Query 38601 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGATT 38660 |||||||| ||| || | |||||||| | ||||||| | || | ||| |||||| | Sbjct 1220 TGTAGAAGTTCAGACTTTATCTGACATTTACCCGTTTCTCAGTAAC-TGTTTGTCAGGTC 1162 Query 38661 AATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCATCG 38720 | || || | ||| ||| | | ||| | ||||||||| | | || |||||| Sbjct 1161 AGATTTAGTTCAAAAACTTCTTCTTCCAGACTTCTTTTCCATCGATGAGCGTATCCATCG 1102 Query 38721 GTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAACC 38780 ||||||| || ||||| ||||| ||||| || ||||| |||||| | || |||| Sbjct 1101 GTGTTCTCCCGCAGCATATTTTGCCTTGGTGAGTTCGGGCAGTATTATATTTTATCAACC 1042 Query 38781 ACTCATCTAAATCCGCTTGTAATG--TCGTTAAATCCGTATAAATTTTCTTCCTAAATGC 38838 ||| || | || ||| ||| ||| || || |||||| || || | || Sbjct 1041 ACTGGTCAAGGTCTAATTGCAATTCCTCGATAGATTG--ATAAATCTTTTTGCGTAAACA 984 Query 38839 CACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTG 38898 ||||| ||||| || | || || || ||||| || || || || || ||||| || || Sbjct 983 AACTTGATAAAACTCGTTTAGTATCGTCTTATGAAATCGCTCACATATCCCATTTGTTTG 924 Query 38899 GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATA 38958 || | ||||||| ||||| |||||||| || ||||| | || | || | || ||| Sbjct 923 AGGTGACCTCACTTTGGTTTTGGTATGCTCAATATCATTCAGAGCCATGTATAACTGATA 864 Query 38959 ATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACAT 39018 ||| || | || | ||||||||| || | |||| ||||| || || || | ||| Sbjct 863 ATCATGTTGATCAGCACGGCCACAATACTCTGTACCTCTATCAGTCAAAATACGAAGCAT 804 Query 39019 CGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACT 39078 ||||| | | ||| || |||| || ||| ||||||||||||| || ||||| | Sbjct 803 AGGTAAGTCGTTTTCCTCATAGAATGGCAATACTCTATCATTCAGCATGTCAGCAGCTGT 744 Query 39079 GATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAA 39138 || | || || ||||||| | || ||| ||||| || || ||||| | ||| Sbjct 743 AATCGGTGTTTTAGTTGTATATAACTTGGCATGAGCCACCTTTGAATAGGTATCCACAAA 684 Query 39139 CGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGA 39198 |||||||| |||| |||||| | ||||||| | || ||||| |||||||||| || Sbjct 683 GGTTTGTTGGTAAACACGACCAATGCCTTTGAAAGTACCAACATAATAAGTATCTTGAGA 624 Query 39199 GCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTT 39258 ||||||||| |||||||| | || ||||| || |||||||| || || | |||||| Sbjct 623 GCCAAGATAACCAGGGTGAGCTGTATCAATCTCTCCACAGGCTTCATCGTCATGTTTCTT 564 Query 39259 ACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTT 39318 || || | ||| ||| |||| || | || || || || | ||| ||||| ||| Sbjct 563 TCGTTCCATTGCTGCTACTTGTGACTCTGTTAGGATGATTCCATCTTCAGCAAC---TTT 507 Query 39319 TTC---CAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGA 39375 || | ||| | || | ||| |||||| ||||| | || ||| |||||||| Sbjct 506 GTCAGATAAGGCTTTCAAGCGTTGTTTAAAACATGCAAGGTCATTACGCAACCAAATACT 447 Query 39376 ACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCCTTACTCACTCTTAC 39435 | ||| || | || ||| ||||| | || |||| || ||||| ||||| ||| Sbjct 446 TCTTACGCCACTTGGTGAGACAAAAGTACCACGTTTGCGAAGTTCATTACTGGTTCTGGT 387 Query 39436 CTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGC-TCTATTGCCTCAT 39494 || ||| || || | |||| |||| | | || || | || || || | || Sbjct 386 TTGACCATGAGCAGGTTCTTCAAAAGCATATTCAACCAC-TATGGCTTCAATAGTAGGAT 328 Query 39495 CAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCAC 39554 | | | |||||| | ||| || ||||||||| | | | || |||| |||||||| Sbjct 327 CTATTCTATTTTTGAGGTTTGGGGTTCGTCTATTTCGCTCAAATAAGGCTTGAACACCAC 268 Query 39555 CTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGC 39614 ||| ||| ||| || ||| ||||| |||||||| || | ||||| | ||||| Sbjct 267 CTTCTTCATGTGCTGATTTATAGCGATAAAATGTATCGCGTGATAAGCCCATCATTTTGC 208 Query 39615 AGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAA 39674 | |||| ||||| || || |||||||| |||||||| | ||| ||| || ||||| | Sbjct 207 AAGCTTTAGAAACGTTTCCAAGTTCTTCAGCTAAATTCAGTAAGCCGACTTTATGTTTTA 148 Query 39675 TGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGATTGATT 39727 | | | ||||| || | ||| |||||| ||| ||| |||| |||||| Sbjct 147 TAATTTTTTCGTTAGTATGTATCATTAGAGTTACCTATTT-TTTATTTTGATT 96 >seq274101 Length=739 Score = 228 bits (252), Expect = 3e-55 Identities = 336/476 (71%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 38816 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAAC 38875 || || || || || ||||| | |||||| ||||| || | ||| || ||||||||||| Sbjct 155 GTGTATATCTTTTTTCTAAAAGTCACTTGATAAAACTCGTTTAAAATCGTTTTATGGAAA 214 Query 38876 CGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCA 38935 || || || ||||| || || ||||| | || ||| | || || |||||||| Sbjct 215 CGCTCAACAATTCCATTGGTTTGTGGATGTGGAGCCTTGGTTCTGGTGTGATCTATGTCG 274 Query 38936 TTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCT 38995 || | |||| |||||||| || ||||| | || ||||| |||||||| ||||| Sbjct 275 TTAAGAGCTAGATAAAGCTGGTAGTCGTGCTGCTCCGGTTTGCCGCAATATTCTGTTCCT 334 Query 38996 CGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTA 39055 | ||||| | ||| | | ||| | ||||| || ||| || |||| | |||| | Sbjct 335 CTATCAGTGAGTATTCTGAGCATTGAAAAACCATGCTCTTCGTAGAATGGCAGCACTCTT 394 Query 39056 TCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCC 39115 || || || || || || || | || | || || | ||||| ||||||||| || Sbjct 395 TCGTTGAGTATGTCTGCTGCGGTAATCGGTGTTTTATTGGTATACAGTTTTGCATGTGCA 454 Query 39116 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 39175 ||||| ||||| ||||| | ||||||||| || |||| || || || || ||||| || Sbjct 455 ACTTTGCTGTATGTATCTACAAACGTTTGCTGGTAAACCCGCCCGACACCCTTGAGAGTG 514 Query 39176 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 39235 || |||||||| |||||||| ||||| || |||||||| || | ||||| || || ||| Sbjct 515 CCAACATAGAAGGTATCTTGCGAGCCTAGGTAGCCAGGATGCTCTGTTTCGATCTCGCCA 574 Query 39236 CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAG 39291 || || ||||||||||| || || | ||||| || || | ||| |||| Sbjct 575 TGAGCTTCCTGTTCTTCTTTCTTGCGTTCCAGTGCTTGAACTTGCGATTCCGTGAG 630 >seq174168 Length=2856 Score = 140 bits (154), Expect = 1e-28 Identities = 182/247 (74%), Gaps = 16/247 (6%) Strand=Plus/Plus Query 39571 TTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATATT 39630 || |||||| || ||||||||||| || |||||| || ||||||||||||| ||| Sbjct 957 TTTATAACGGTAAAATGTATCTCGTGACAAACCCATTGTCTTACAGGCTTGAGAAACATT 1016 Query 39631 ACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGA 39690 || |||||||| |||| |||||||||||| |||||||||||| | | |||| Sbjct 1017 CCCTAGTTCTTCGGCTAGATTTAATAAACCAACCTTGTGTTTAATTATTTTTTCATTAGT 1076 Query 39691 ATAAAACATGAGAGTTTCCTTTTT-GTTTAGATTGATTTTTGACACTCATATTCTAAACG 39749 || || ||| || ||| ||| || ||||||||| || | | ||| |||| ||||||| Sbjct 1077 ATGAATCATAAGTGTTACCTCTTAAGTTTAGATTAATATGGCA-ACT-ATAT-CTAAACG 1133 Query 39750 GGAAACTCTCACTTTT--------TAGAGTGA----ATTGTCAGATCAAGTCTGATCTTC 39797 || ||| || |||||| || | | | | ||||||||||||||||| |||| Sbjct 1134 GGTAACACTTACTTTTGCAACTTTTATAATTACAAAAGTGTCAGATCAAGTCTGAACTTC 1193 Query 39798 TACATAT 39804 ||||||| Sbjct 1194 TACATAT 1200 >seq39572 Length=15339 Score = 95.1 bits (104), Expect = 4e-15 Identities = 200/287 (70%), Gaps = 15/287 (5%) Strand=Plus/Plus Query 38592 AATATTATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTG-T 38650 ||||| | |||||||| ||| || | |||||||||| ||||||| | | ||| | Sbjct 2992 AATATAACCTGTAGAAGTTCAGACTTGATCTGACAGTTAGCCGTTTTG--TGGCGGTGAT 3049 Query 38651 CTGTCAGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAA 38709 ||||||||||| ||||| | ||| | ||||||| ||| || |||| || |||| | Sbjct 3050 CTGTCAGATTAGATTTG-GTTTACAAACTTTTCCTTCCAGATTTGTTTCCCTTCAATCAT 3108 Query 38710 GGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGAT-TA 38767 || | | |||||||| || || || ||||| |||||||| ||||| || ||| | || Sbjct 3109 AGTCTCGAAGGGTGTTCTTCCGCAACATATTTTGCCTTGATGGGTTCGTTGCGTGTTGTA 3168 Query 38768 -TAATACATTAACCACTCATCTAAATCCGCTTGTAAT--GTCGTTAAATCCGTATAAATT 38824 | || ||| ||| ||||| | || ||||| | | ||| | |||| | ||| Sbjct 3169 GTGATGCAT---CCATTCATCAAGGTCGGCTTGCAGTTGCTCGAGCGTTTCGTACAGATT 3225 Query 38825 TTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATG 38871 | || | |||| || || || || || ||||||||||| || || Sbjct 3226 T--TTACGGAATGTGACCTGATAGAACTCCTGTAAGATTGTCTTGTG 3270 >seq271562 Length=725 Score = 86.0 bits (94), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 39542 GCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATT 39601 ||||| ||||| ||||| || || |||| | || ||||| ||||| ||||| | | | Sbjct 560 GCTTCCACACCGCCTTGTTCTACAGCTTCCTTGTAGCGATAAAATGTCTCTCG--TGAAT 503 Query 39602 --CCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAAC 39659 ||||||| ||||||||||| |||| || |||| |||||||| ||| | || | Sbjct 502 ACCCCATTATCTTGCAGGCTTGGGAAACGTTCTGGAGTTGTTCTGCTAGATTGATCAATC 443 Query 39660 CGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTA 39719 || || | | |||| | | || || || |||||| ||| |||||| ||||| Sbjct 442 CGACTTTATATGAGATGACTTTCTCGGTACTATGAATCATGAGGGTTACCTTTTGGTTTA 383 Query 39720 GATTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTT 39766 ||| | ||| | | ||| ||| || | || ||| |||||||||| Sbjct 382 AATTAAATTTCGCAATTCA-ATT-AAAGCCGGTAACCCTCACTTTTT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159579190903680