Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028885.1 Length=72378 Score E Sequences producing significant alignments: (Bits) Value seq121188 116 2e-21 >seq121188 Length=15723 Score = 116 bits (128), Expect = 2e-21 Identities = 348/531 (66%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 1311 CGGTGCCAAGACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAGCGACCGCAGCTTGCGGT 1370 |||||||||| ||||| |||||||| ||||| | ||||| ||||| |||||| || Sbjct 1248 CGGTGCCAAGTCTGGTATCCGTGGTACGAAGATCTTTGGTAAACGACCTTCGCTTGCAGT 1189 Query 1371 ACTGGATGACTTGGTTTCGGACGAAGATGCTCGCTCGCCAACCGTCATCGCAGCCATCGA 1430 || ||||||||| | || || |||||||| || ||||| | || || || | Sbjct 1188 TCTCGATGACTTGATCTCAGATGAAGATGCGAAGTCTCCAACTGCGATGGCGAAGATTAA 1129 Query 1431 AGACACGGTGTACAAGGCAGTGGACTACGCACTGCACCCGAAGAAGAACATGATCAT-CT 1489 || || || ||||||| | || |||| || ||||| | ||| | || || || Sbjct 1128 CGATACTGTTTACAAGGGTTTACACCACGCTCTTCACCCACAAAAGTCAAAGACTATTCT 1069 Query 1490 GGTCGGGTACACCGTTCAACGCGAAGGATCCACTGTACAAAGCAGTGGAGTCTGGTGCCT 1549 | ||| || || ||| || ||| || |||| ||||| | ||||||||||| | Sbjct 1068 GAATGGG-ACTCCCTTCGACAAGAACGACATCGTGTATCAAGCAATCGAGTCTGGTGCAT 1010 Query 1550 GGAAGGTCAACGTCTACCCTGTGTGCGA-GAGATTCCCG-TGCTCGCGGGAAGAGTTCAG 1607 || |||| ||||| | || ||||| | ||| |||| | || | | | || ||| Sbjct 1009 GGGAGGTGAACGTTTGGCCAGTGTGTAAGGAGTTTCCTGTTGAT--AAGAAGGATTTCCA 952 Query 1608 GGGTGCATGGGCTGACCGATTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCAA 1667 |||||| | || || || ||||||||| || || | ||| | | ||| Sbjct 951 ACCAGCATGGCCAGAACGTTTTACCTACGACCAGTTGAAAGAGGATTACGACTTCTTCAA 892 Query 1668 GAAGGCAGGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCCGACGA 1727 | | ||| || | ||| ||||| || ||||||||||| | ||| | || || Sbjct 891 GCAACAAGGTAAACTTGAGTCGTTCCGTCAGGAGCTTATGCTTCGGATTCAGGATGATGA 832 Query 1728 AGACCGACTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGGCGCAACGTACTGGACAA 1787 || | | ||||| ||||| | | ||||| | ||| || | || | || Sbjct 831 GTCTCGTTTGGTTCAGGAAGGTGACATCGGTTGGTTCCAACGGAAACACATCCTTGCGAA 772 Query 1788 TAAGAAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAA 1838 |||||| || || |||||||||||||||||||| || || || |||| Sbjct 771 CAAGAAGGATTATAAGTTCTACATCACCACTGACTTTGCCACGTCGTCGAA 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230670550479864