Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq30887 361 1e-95 seq274101 228 2e-55 seq174168 134 3e-27 seq39572 91.5 3e-14 seq271562 86.0 1e-12 >seq30887 Length=1222 Score = 361 bits (400), Expect = 1e-95 Identities = 765/1133 (68%), Gaps = 14/1133 (1%) Strand=Plus/Minus Query 24397 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGATT 24456 |||||||| ||| || | |||||||| | ||||||| | || | ||| |||||| | Sbjct 1220 TGTAGAAGTTCAGACTTTATCTGACATTTACCCGTTTCTCAGTAAC-TGTTTGTCAGGTC 1162 Query 24457 AATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCATCG 24516 | || || | ||| ||| | | ||| | ||||||||| | | || |||||| Sbjct 1161 AGATTTAGTTCAAAAACTTCTTCTTCCAGACTTCTTTTCCATCGATGAGCGTATCCATCG 1102 Query 24517 GTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAACC 24576 ||||||| || ||||| ||||| ||||| || ||||| |||||| | || |||| Sbjct 1101 GTGTTCTCCCGCAGCATATTTTGCCTTGGTGAGTTCGGGCAGTATTATATTTTATCAACC 1042 Query 24577 ACTCATCTAAATCCGCTTGTAATG--TCGTTAAATCCGTATAAATTTTCTTCCTAAATGC 24634 ||| || | || ||| ||| ||| || || |||||| || || | || Sbjct 1041 ACTGGTCAAGGTCTAATTGCAATTCCTCGATAGATTG--ATAAATCTTTTTGCGTAAACA 984 Query 24635 CACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTG 24694 ||||| ||||| || | || || || ||||| || || || || || || || || || Sbjct 983 AACTTGATAAAACTCGTTTAGTATCGTCTTATGAAATCGCTCACATATCCCATTTGTTTG 924 Query 24695 CGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGCTCATA 24754 || | || |||||||| | || ||||||||||| | || | || | || ||| Sbjct 923 AGGTGACCTCACTTTGGTTTTGGTATGCTCAATATCATTCAGAGCCATGTATAACTGATA 864 Query 24755 ATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACAT 24814 ||| || | || | ||||||||| || | |||| ||||| || || || | ||| Sbjct 863 ATCATGTTGATCAGCACGGCCACAATACTCTGTACCTCTATCAGTCAAAATACGAAGCAT 804 Query 24815 CGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACT 24874 ||||| | | ||| || |||| || ||| ||||||||||||| || ||||| | Sbjct 803 AGGTAAGTCGTTTTCCTCATAGAATGGCAATACTCTATCATTCAGCATGTCAGCAGCTGT 744 Query 24875 GATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAA 24934 || | || || ||||||| | || ||| ||||| || || ||||| | ||| Sbjct 743 AATCGGTGTTTTAGTTGTATATAACTTGGCATGAGCCACCTTTGAATAGGTATCCACAAA 684 Query 24935 CGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGA 24994 |||||||| |||| |||||| | ||||||| | || ||||| |||||||||| || Sbjct 683 GGTTTGTTGGTAAACACGACCAATGCCTTTGAAAGTACCAACATAATAAGTATCTTGAGA 624 Query 24995 GCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTT 25054 ||||||||| |||||||| || || ||||| || |||||||| || || | |||||| Sbjct 623 GCCAAGATAACCAGGGTGAGCTGTATCAATCTCTCCACAGGCTTCATCGTCATGTTTCTT 564 Query 25055 ACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTT 25114 || || | ||| ||| |||| || | || || || || | ||| ||||| ||| Sbjct 563 TCGTTCCATTGCTGCTACTTGTGACTCTGTTAGGATGATTCCATCTTCAGCAAC---TTT 507 Query 25115 TTC---CAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGA 25171 || | ||| | || | ||| |||||| ||||| | || ||| |||||||| Sbjct 506 GTCAGATAAGGCTTTCAAGCGTTGTTTAAAACATGCAAGGTCATTACGCAACCAAATACT 447 Query 25172 ACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCTTAC 25231 | ||| || | || ||| ||||| | || |||| || ||||| ||||| ||| Sbjct 446 TCTTACGCCACTTGGTGAGACAAAAGTACCACGTTTGCGAAGTTCATTACTGGTTCTGGT 387 Query 25232 CTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGC-TCTATTGCCTCAT 25290 || ||| || || | |||| |||| | | || || | || || || | || Sbjct 386 TTGACCATGAGCAGGTTCTTCAAAAGCATATTCAACCAC-TATGGCTTCAATAGTAGGAT 328 Query 25291 CAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCAC 25350 | | | |||||| | ||| || ||||||||| | | | || |||| |||||||| Sbjct 327 CTATTCTATTTTTGAGGTTTGGGGTTCGTCTATTTCGCTCAAATAAGGCTTGAACACCAC 268 Query 25351 CTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGC 25410 ||| ||| ||| || ||| ||||| |||||||| || | ||||| | ||||| Sbjct 267 CTTCTTCATGTGCTGATTTATAGCGATAAAATGTATCGCGTGATAAGCCCATCATTTTGC 208 Query 25411 AGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAA 25470 | |||| ||||| || || |||||||| |||||||| | ||| ||| || ||||| | Sbjct 207 AAGCTTTAGAAACGTTTCCAAGTTCTTCAGCTAAATTCAGTAAGCCGACTTTATGTTTTA 148 Query 25471 TGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGATTGATT 25523 | | | ||||| || | ||| |||||| ||| ||| |||| |||||| Sbjct 147 TAATTTTTTCGTTAGTATGTATCATTAGAGTTACCTATTT-TTTATTTTGATT 96 >seq274101 Length=739 Score = 228 bits (252), Expect = 2e-55 Identities = 336/476 (71%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 24612 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAAC 24671 || || || || || ||||| | |||||| ||||| || | ||| || ||||||||||| Sbjct 155 GTGTATATCTTTTTTCTAAAAGTCACTTGATAAAACTCGTTTAAAATCGTTTTATGGAAA 214 Query 24672 CGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCA 24731 || || || || || || || |||||| |||||||| | |||| || || || Sbjct 215 CGCTCAACAATTCCATTGGTTTGTGGATGTGGAGCCTTGGTTCTGGTGTGATCTATGTCG 274 Query 24732 TTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCT 24791 || | |||| |||||||| || ||||| | || ||||| |||||||| ||||| Sbjct 275 TTAAGAGCTAGATAAAGCTGGTAGTCGTGCTGCTCCGGTTTGCCGCAATATTCTGTTCCT 334 Query 24792 CGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTA 24851 | ||||| | ||| | | ||| | ||||| || ||| || |||| | |||| | Sbjct 335 CTATCAGTGAGTATTCTGAGCATTGAAAAACCATGCTCTTCGTAGAATGGCAGCACTCTT 394 Query 24852 TCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCC 24911 || || || || || || || | || | || || | ||||| ||||||||| || Sbjct 395 TCGTTGAGTATGTCTGCTGCGGTAATCGGTGTTTTATTGGTATACAGTTTTGCATGTGCA 454 Query 24912 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 24971 ||||| ||||| ||||| | ||||||||| || |||| || || || || ||||| || Sbjct 455 ACTTTGCTGTATGTATCTACAAACGTTTGCTGGTAAACCCGCCCGACACCCTTGAGAGTG 514 Query 24972 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 || |||||||| |||||||| ||||| || |||||||| || | ||||| || || ||| Sbjct 515 CCAACATAGAAGGTATCTTGCGAGCCTAGGTAGCCAGGATGCTCTGTTTCGATCTCGCCA 574 Query 25032 CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAG 25087 || || ||||||||||| || || | ||||| || || | ||| |||| Sbjct 575 TGAGCTTCCTGTTCTTCTTTCTTGCGTTCCAGTGCTTGAACTTGCGATTCCGTGAG 630 >seq174168 Length=2856 Score = 134 bits (148), Expect = 3e-27 Identities = 179/244 (73%), Gaps = 16/244 (7%) Strand=Plus/Plus Query 25367 TTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATATT 25426 || |||||| || ||||||||||| || |||||| || ||||||||||||| ||| Sbjct 957 TTTATAACGGTAAAATGTATCTCGTGACAAACCCATTGTCTTACAGGCTTGAGAAACATT 1016 Query 25427 ACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGA 25486 || |||||||| |||| |||||||||||| |||||||||||| | | |||| Sbjct 1017 CCCTAGTTCTTCGGCTAGATTTAATAAACCAACCTTGTGTTTAATTATTTTTTCATTAGT 1076 Query 25487 ATAAAACATGAGAGTTTCCTTTTT-GTTTAGATTGATTTTTGACACTCATATTCTAAACG 25545 || || ||| || ||| ||| || ||||||||| || | | ||| |||| ||||||| Sbjct 1077 ATGAATCATAAGTGTTACCTCTTAAGTTTAGATTAATATGGCA-ACT-ATAT-CTAAACG 1133 Query 25546 GGAAACTCTCACTTTT--------TAGAGTGA----ATTGTCAGATCAAGTCTGATCTTC 25593 || ||| || |||||| || | | | | ||||||||||||||||| |||| Sbjct 1134 GGTAACACTTACTTTTGCAACTTTTATAATTACAAAAGTGTCAGATCAAGTCTGAACTTC 1193 Query 25594 TACA 25597 |||| Sbjct 1194 TACA 1197 >seq39572 Length=15339 Score = 91.5 bits (100), Expect = 3e-14 Identities = 194/278 (70%), Gaps = 15/278 (5%) Strand=Plus/Plus Query 24397 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTG-TCTGTCAGAT 24455 |||||||| ||| || | |||||||||| ||||||| | | ||| |||||||||| Sbjct 3001 TGTAGAAGTTCAGACTTGATCTGACAGTTAGCCGTTTTG--TGGCGGTGATCTGTCAGAT 3058 Query 24456 TA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCAT 24514 || ||||| | ||| | ||||||| ||| || |||| || |||| | || | | Sbjct 3059 TAGATTTG-GTTTACAAACTTTTCCTTCCAGATTTGTTTCCCTTCAATCATAGTCTCGAA 3117 Query 24515 CGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGAT-TA-TAATACAT 24571 |||||||| || || || ||||| |||||||| ||||| || ||| | || | || ||| Sbjct 3118 GGGTGTTCTTCCGCAACATATTTTGCCTTGATGGGTTCGTTGCGTGTTGTAGTGATGCAT 3177 Query 24572 TAACCACTCATCTAAATCCGCTTGTAAT--GTCGTTAAATCCGTATAAATTTTCTTCCTA 24629 ||| ||||| | || ||||| | | ||| | |||| | |||| || | Sbjct 3178 ---CCATTCATCAAGGTCGGCTTGCAGTTGCTCGAGCGTTTCGTACAGATTT--TTACGG 3232 Query 24630 AATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATG 24667 |||| || || || || || ||||||||||| || || Sbjct 3233 AATGTGACCTGATAGAACTCCTGTAAGATTGTCTTGTG 3270 >seq271562 Length=725 Score = 86.0 bits (94), Expect = 1e-12 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 25338 GCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATT 25397 ||||| ||||| ||||| || || |||| | || ||||| ||||| ||||| | | | Sbjct 560 GCTTCCACACCGCCTTGTTCTACAGCTTCCTTGTAGCGATAAAATGTCTCTCG--TGAAT 503 Query 25398 --CCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAAC 25455 ||||||| ||||||||||| |||| || |||| |||||||| ||| | || | Sbjct 502 ACCCCATTATCTTGCAGGCTTGGGAAACGTTCTGGAGTTGTTCTGCTAGATTGATCAATC 443 Query 25456 CGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTA 25515 || || | | |||| | | || || || |||||| ||| |||||| ||||| Sbjct 442 CGACTTTATATGAGATGACTTTCTCGGTACTATGAATCATGAGGGTTACCTTTTGGTTTA 383 Query 25516 GATTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTT 25562 ||| | ||| | | ||| ||| || | || ||| |||||||||| Sbjct 382 AATTAAATTTCGCAATTCA-ATT-AAAGCCGGTAACCCTCACTTTTT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113931378381792