Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028908.1 Length=72409 Score E Sequences producing significant alignments: (Bits) Value seq121188 217 7e-52 seq76541 185 4e-42 seq266624 125 3e-24 seq121189 113 2e-20 seq282583 100 1e-16 >seq121188 Length=15723 Score = 217 bits (240), Expect = 7e-52 Identities = 910/1398 (65%), Gaps = 78/1398 (6%) Strand=Plus/Plus Query 67452 ATGGTGTCGATGAAGTCATCCTTGCCCTTGAGGCCATTGGCGGTAGCCAATCGAATCTGG 67511 ||||| |||| | |||||||||| || || | |||| ||||||||| ||||| Sbjct 283 ATGGTATCGAGGCAGTCATCCTTACCTTTCAAACCATCTTTGGTAGCCAAAGAGATCTGT 342 Query 67512 CCCATGGCAATGGTCATGATCTTGGAT-TCCTTCATCTCTTCCGGCCAGAAC---ATCTT 67567 ||||| | | || || |||| | || |||||||| || |||| ||||| Sbjct 343 TCCATGAACAAGCCCA-GAACTTGAGTATCTTTCATCTCCAAGGG---GAACTTGATCTT 398 Query 67568 ACCCATCTTGAACCAAGGAACGACAAGGTTGAAGCGGGACAGCTTATTGGTGACGGGTCG 67627 || ||| || |||||| || || || || | ||| |||| || | |||||| Sbjct 399 TCCAGCCTTAAATAGAGGAACAACCAGATTAAATCTACTCAGTTTATCTGTCATGGGTCG 458 Query 67628 GATACCAGGAGCACCGGACTTCT-CAGAGGAAGCGAACGAGAACCAGATATTCCGGTTGA 67686 |||||| || ||| ||||| | | | ||| ||| | ||| |||||| Sbjct 459 GATACCCGGTTTACC---CTTCTGCTGGGCAAGGTT----GAAGTAAATACTCCGGTAAT 511 Query 67687 TCATCTCCCGC-TGAAGCAGGGCAATGAAGCCTTGCTGCTGTCCAGTGATTTCAATTCCG 67745 ||| || ||| ||| || | | | || || |||||| ||||| || |||| ||| Sbjct 512 CCATTTCACGCATGATCCATTGGA-TAAACCCACCCTGCTGACCAGTAATCTCAACACCG 570 Query 67746 ACCTGCTGGGGCTTGTACATTTGAACCAAACGGAAGAGGGCGTCATACGTCTTCTCCATG 67805 || ||| || |||||| | ||||||||| || | |||| | | ||||| Sbjct 571 ACGCTCTGTGGATTGTACTCCTCAACCAAACGAAACAAATCGTCGATTGAGGTATCCATT 630 Query 67806 GTTTGCCGTTCACAGATGCCATCCACCCAGAACCAATCACCATTGGCATTGTAAGCCCAG 67865 || || || |||| | || || |||||| |||||| ||||| | | || ||||| Sbjct 631 GTCTGTCGAGCACAAACACCGTCAACCCAGTGCCAATCCCCATTCGAGTCATACGCCCAT 690 Query 67866 ACGGAGATTACCGTGTAGTCGGCAGTCTGCTTGTCCGAGGTAGCGAAGTCAGTGGTGATG 67925 || || ||| | || || ||||| || || ||| || || ||||||||||||||| Sbjct 691 ACTGATTGTACGGAATAATCCGCAGTTTGTTTCGACGACGTGGCAAAGTCAGTGGTGATG 750 Query 67926 TAGTAGTTGTAGTTGCCTT--TGAACCGGAGCAGTTGAGCACGACTGTACCAGCAGATTT 67983 ||| | || || | |||| || | || | || || | |||| | ||| | Sbjct 751 TAGAACTTATAAT--CCTTCTTGTTCGCAAGGATGTGTTTCCGTTGGAACCAACCGATGT 808 Query 67984 CCCCGTCCTGCACCAGACG---CTCTTCTTCCGAGGTGA-TGCGCAGCATCAATTCCTGG 68039 | || ||||| |||| ||| ||| || ||| ||| | || ||||| | ||||| Sbjct 809 CACCTTCCTGAACCAAACGAGACTCATCATCC----TGAATCCGAAGCATAAGCTCCTGA 864 Query 68040 TTGAAG--CCCGA---TACCTTGCCCGTCTTCACGGCCATGTCGTATTGGGCCTTCACGT 68094 ||| | | | ||||||| ||| | | | |||||| | | |||| | Sbjct 865 CGGAACGACTCAAGTTTACCTTGTTG--CTTGAAG---AAGTCGTAATCCTCTTTCAACT 919 Query 68095 AGTCGTAGCTGAACCGGTCCTCCCAGGCACCCACGAAATCCTCGCGGGATACAGGGAACC 68154 ||||||| | || || || ||| || |||||||| ||||| ||| Sbjct 920 GGTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACAGGAAACT 979 Query 68155 GCTCACACACCGGCCAGACGTTGACACTCCAGGCCCCCGATTCCACAGCTTCGAT-CATG 68213 || |||||| ||||| ||||| || ||| || || || || | |||| ||| || | Sbjct 980 CCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTT-GATACACG 1038 Query 68214 ATGTCGGACTTATTGAAGGGGGTGCCATTGAAGATCACCTTCCGGCGAGTC-GGGTCCAG 68272 |||||| ||| | |||||| || ||||| | || ||| | | | |||| || Sbjct 1039 ATGTCGTTCTTGTCGAAGGGAGTCCCATTCAGAATAGTCTTT-GACTTTTGTGGGTGAAG 1097 Query 68273 AGCGTGGTTCACCCCCTTATATACAGTGTCCTTGATCGACTGCATAGCAGCCGGAGACTT 68332 |||||||| | ||||| || ||||| || || ||| | ||| |||| |||||||| Sbjct 1098 AGCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTTCGCCATCGCAGTTGGAGACTT 1157 Query 68333 GGCGTCATCGTCAGACACCAAGTCATCCAGGA-TGCAGAGCACCGGGCGCTTCCCGAAAA 68391 || || || || || | ||||||||| || | |||| ||| || || || || || | Sbjct 1158 CGCATCTTCATCTGAGATCAAGTCATCGAGAACTGCA-AGCGAAGGTCGTTTACCAAAGA 1216 Query 68392 TCTTGGAACCACGGAGACCAGTCTTGGCACCGAACATCTTGCAGCCCAGACGATGCCCCG 68451 |||| | |||||||| ||||| ||||||||||||||| | | ||| || | || Sbjct 1217 TCTTCGTACCACGGATACCAGACTTGGCACCGAACAT-ACGGACACCAAAC-TTATTCCN 1274 Query 68452 ACTTGGATCGGAACTCCAGGTAATTGTCAGTG------AAGGTAGCCTGGGGAATCCACT 68505 || | | |||||||| ||| || || ||| | ||| | || ||||| | Sbjct 1275 NCTACGTT--GAACTCCATGTAGTTCTCTGTGATCCGAACCCCAGCTTCTGGCATCCAGT 1332 Query 68506 CCTGAAGGAA-----AGGACTGTTCTCG-TACCGGAACTCAATGTTCTTCCGTGCAGACT 68559 ||| || || | || | | || | |||| || | || || || |||| Sbjct 1333 GCTGGAGAAACTCCGAAGAGTCATAACGAGATCGGA--TCGA----CTCACGAGCGGACT 1386 Query 68560 TCACACCGTTGTCCATGGAGTCAGACACATAGATCATCGCATCAATAGTTCCGAAGTTCG 68619 ||||||| |||||||||||||| || | ||| | ||| || | |||| || || Sbjct 1387 TCACACCATTGTCCATGGAGTCCGAAATATACAACAT-GCTTTGGACTTTCCCAAAACCG 1445 Query 68620 GCAA-CTCACCGAACACTGCCAGGAACAGAACG--AAGTATTCCATGAACAGAGTTGTCT 68676 | || | | ||||| ||||| | | |||| | |||||| | ||||| ||| || | Sbjct 1446 GGAAGATGATTGAACATCGCCAG--ATACAACGTCATGTATTCAAAGAACAAAGTGGTTT 1503 Query 68677 TAGCTGCACCCCGGAAACAAAGATTGGCGAT--GTACTCATGAGGTTCAGTGAGTTTGTC 68734 | || | ||| |||||||| ||||||| || || || || |||| || | |||||| Sbjct 1504 TCGCAGAACCACGGAAACACAGATTGGTAATCCGT-TTCTTGCTGTTC-GTCACTTTGTC 1561 Query 68735 CAACATCTTCAAGTGAACAGGCGGAGTCTTGTTGGACTCTCCTTGTTCTCCATTCACCAA 68794 |||||| | ||| | | ||||| |||| ||| |||| | ||||||||| Sbjct 1562 CAACATGGCAAGGTGCATGGAAGGAGTTTTGTGCTCCTCCCCTTTACCGTCATTCACCAG 1621 Query 68795 CTTGATGAAGTTCATGAA 68812 |||||||||||||||||| Sbjct 1622 CTTGATGAAGTTCATGAA 1639 >seq76541 Length=11138 Score = 185 bits (204), Expect = 4e-42 Identities = 292/413 (71%), Gaps = 4/413 (1%) Strand=Plus/Minus Query 25810 GATTTATCACAATG-CTGCCTTTGACATGTACATCCTGGTCTACCAGTTGTTCATGACAG 25868 ||| |||||||| |||| | |||| | || | ||| | || |||||||| ||| Sbjct 714 GATCTATCACAACATCTGC-TATGACGTTTATGTGCTGATTTATCAGTTGTTTATGGATC 656 Query 25869 ACCTCATCGACACAGAAGGCATGCTCAATGGCTTCGATGTGATGATGCGTAATTGGGATT 25928 || || | ||| ||| || |||||| | || | || || | | || || ||||| | Sbjct 655 ACATCCTTGACCAAGAGGGAATGCTCGAAGGTCTGGAAGTCCTCCTACGCAACTGGGAAT 596 Query 25929 GCACCAAGCTCATTACGTATTTGGCAACCAACTCCTGTGCAGGCAACAAGCTGGGCCTGA 25988 | || ||||||| |||||| |||| ||||| || ||||| || ||| || |||| |||| Sbjct 595 GTACACAGCTCATCACGTATCTGGCCACCAATTCATGTGCTGGTAACGAGTTGGGTCTGA 536 Query 25989 AGGATCAAGCACAAGAGTTCGCAGGCAACTATGCGGAGTCCGAGATCAAGGACATTACCC 26048 ||| ||| || || ||||||||||| |||||||| | || ||| | ||||| || | Sbjct 535 AGGTTCAGGCTCAGGAGTTCGCAGGAAACTATGCTGTTGAAGACATCCATGACATCACGC 476 Query 26049 GCATCCCACTGCCTCAGCTTCTGCGGTACAACCTCGTGGATACTCTCTCCACTTGGTTCG 26108 ||||| ||||| |||| || ||||||||||||||| || || ||||||| | Sbjct 475 AGATCCCTCTGCCAAAGCTCTTGGAATACAACCTCGTGGATGGCCTATCTACTTGGTATG 416 Query 26109 TCCATACCAAGCACTGGTCAACCATGGT-GCATGACCAACAGGAGGATATCTACGAGACG 26167 || | | || || || || ||||| ||| ||| | ||||| | ||||||| | Sbjct 415 TCTACAATAAACATCATTCCACGATGGTCGCA-GACGATCAGGAATACATCTACGTTGAG 357 Query 26168 CTATTCAAGAAGGCGTCCAAGGACATCATCCAAATGCAGCTTACTGGCATGCC 26220 || ||||| ||||| | |||||||| ||||||||| | || || ||||| Sbjct 356 CTGTTCAAAAAGGCTGTGATCGACATCATTCAAATGCAGTTGACGGGTATGCC 304 >seq266624 Length=731 Score = 125 bits (138), Expect = 3e-24 Identities = 336/505 (67%), Gaps = 14/505 (3%) Strand=Plus/Plus Query 55232 TTCCAATTGCCGCATTTCTT-CAGCAATCGGATCGGGTTGAGGCT----CGAAGGACTTG 55286 ||| | |||| ||||||| | | | ||| ||||| ||||| || | |||| || || Sbjct 73 TTCAAGTTGCTGCATTTCCTGCTGGAAT-GGATCAGGTTGTGGTTGGTACGAACGAATTT 131 Query 55287 ATGGCGTGAGCCAAGACAGGCATACGCTTCAGCTTGGCAATCTCGGACAGGATCATCTTG 55346 | | |||||| ||||||||||||| || | ||||||| ||| | |||| | Sbjct 132 GT----TCAGCCAACTCAGGCATACGCTTGAGGTCAGCAATCTTACCCAGAACGATCT-G 186 Query 55347 GTGATGCCAAAG-TCCATGGTATTGCCCAGAGTCTGGAGCATGAAGGAGAGGTCTTGAGC 55405 || || | ||||| | || | |||||| || | | || || | || Sbjct 187 ACGAAGCATCGGATCCATATCAGGACCAACAGTCTGAAGAACCATACCAAGATCATTGGC 246 Query 55406 CTTCTGGTTATCTACTTCAGCAGTGGCAATGTCCACTTCCAAGTCGAAGTTACCAGCCAA 55465 ||||| | ||| ||| || |||| || || || | || ||| |||||||||||||| Sbjct 247 TTTCTGTTCATCAACTGAGGCTGTGGAGATATCAACCTTCAGGTCAAAGTTACCAGCCAA 306 Query 55466 GTCTTCACGTTTGACCGTGACGTACTCGGAGTTGGTGACTCGGATGACTTCCTCTTCCGA 55525 || ||| || || |||| ||| || | || | ||||||| || Sbjct 307 CTCAGAACGAGAGATTTCAACAAACTCTTCGTTTGTCCCACGAACAACTTCCTGCTCTTC 366 Query 55526 CATGAAGACAGCGTTCATGGCGATGATCTTCGAGCCGA-CTTCGGTCATACCCTTGGCCA 55584 || ||| ||| ||||| |||||||||||| |||| |||| | |||||| ||||||| Sbjct 367 CAAGAACTGAGCATTCATTGCGATGATCTTCTCACCGATCTTCTG-CATACCTTTGGCCA 425 Query 55585 GACGGCGAAGGATTGCCATTTCTCGCTTGGACGACGCATCCAGCACGCCACGGATACCGG 55644 |||| |||| || ||| || || || | | ||||| | || |||||||| | Sbjct 426 GACGACGAACAATGCTCATCTCCCGGACAGATGTAGAGTCCAGAGCACCCCGGATACCAG 485 Query 55645 CAGCCACATCACCGTATGCCTCACCGGAGACACCACCAGCGAAGGACTTCACACCAGTCA 55704 || || ||| || || ||||| || | |||||| | ||| || ||||| || || | Sbjct 486 TTGCAACGGAACCATACGCATCACCAGAAATACCACCGGAGAATGATTTCACCCCGGTAA 545 Query 55705 GCGCTTCAGCCTCTTGGTTCTGGAG 55729 | ||||| || |||||||||||||| Sbjct 546 GTGCTTCTGCTTCTTGGTTCTGGAG 570 >seq121189 Length=2370 Score = 113 bits (124), Expect = 2e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 13683 CTGGCTTCGGCCATAGAAGAATTCGACATGCCGGTCAACCTGGTCGGTGTGGTGCATGAC 13742 |||||||||||||| ||||| ||| ||||||| || | ||||| ||||| || || ||| Sbjct 1745 CTGGCTTCGGCCATTGAAGAGTTCAACATGCCAGTAGATCTGGTTGGTGTTGTTCACGAC 1804 Query 13743 AAGTCCTCCTGGGCGCGTCGTGGCCTGTCGGTCTTCAACACGGTTATCGAGCCGGGCTGG 13802 || ||| | ||||| | ||||| ||| || ||||||||||| ||||| ||||| ||| Sbjct 1805 AAATCCACTTGGGCCAGACGTGGGCTGAGTGTTTTCAACACGGTCATCGAACCGGGTTGG 1864 Query 13803 AAAGG 13807 ||||| Sbjct 1865 AAAGG 1869 >seq282583 Length=1909 Score = 100 bits (110), Expect = 1e-16 Identities = 231/340 (68%), Gaps = 16/340 (5%) Strand=Plus/Minus Query 26969 TACGACGGTCACTGTCTCCGAGCGTACTCGTACTTCGGAGATCAGATGGAAGGGATTGAT 27028 || || |||||||| || ||||| ||||| || || ||||| |||| | || || Sbjct 1444 TATGATGGTCACTGCCTACGAGCTTACTCTTATTTTGGAGAGGTTATGGGTGATATCGAC 1385 Query 27029 CCTGAATCGGTGGAGTCCATCAACTCCATTGAATCGAAGTACAAGGATTTGCGGCAGGAA 27088 ||| || || || ||||||||| |||| ||| |||||| | | | || || Sbjct 1384 CCTACTTCAGTCGATAGCATCAACTCGATTGCGAAGAAATACAAGCAGCAGAGACAAGAC 1325 Query 27089 AGTAAGGCTCCCACTTTTGCCTTGACCTATCAAGGCACCTACATCACCTTGATGAAAAAC 27148 ||| ||||| || || || |||| ||||| || || ||||| ||| ||||||| ||| Sbjct 1324 TCTAAAGCTCCAACCTTCGCACTGACATATCAGGGAACTTACATGACCCTGATGAACAAC 1265 Query 27149 TGCGGCTTCTCGGAAGAGAA--GGCA-AAG--ATGGTGGAAGCAAAATACCACGAGATGT 27203 || || ||| | ||| ||| ||| ||| || | | | ||| ||| | |||||| Sbjct 1264 TGTGGTTTCA-GCAAG-GAATTGGCTCAAGCAATTGAGAACGCA---TACAAGAAGATGT 1210 Query 27204 ACCGGGT---GAGCACTGAATGGGTGCAAGCCAAGCTGAACCAAGCTGCCAAGGATGGAT 27260 || ||| || || | |||||| | | | ||| | ||||| |||||||||| | Sbjct 1209 ACGTGGTCTCGATCA---ACTGGGTGAATGACCGACTGGAACAAGCCACCAAGGATGGCT 1153 Query 27261 ACGTCACCACAGCTTTCGGGCTGCGTGTGAGAACACCCCT 27300 || |||| || ||||| || | ||||||||||| || Sbjct 1152 ACATCACTGTGGCCTTCGGTCTCAGAGTGAGAACACCTCT 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230769401543120