Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028924.1 Length=48689 Score E Sequences producing significant alignments: (Bits) Value seq286089 374 3e-99 seq286088 329 1e-85 seq251574 109 2e-19 >seq286089 Length=886 Score = 374 bits (414), Expect = 3e-99 Identities = 270/312 (87%), Gaps = 0/312 (0%) Strand=Plus/Minus Query 38128 GTAAAAAGTTTCTCGGTAGAtttttttGTCTGTACGTTATTATTCATTCTTTGTGGTATT 38187 ||||| | ||| || || |||||||| || | ||| || ||||||||||||||||||||| Sbjct 313 GTAAATAATTTTTCTGTCGATTTTTTAGTGTTTACATTGTTATTCATTCTTTGTGGTATT 254 Query 38188 TCCTTTTCCCAAATACATTTAAAATCTTCTGGAGCATTGTATTCTGAAACAAATACTTTA 38247 || |||||||||||||||||||| || || |||||||||||||| |||||||| |||||| Sbjct 253 TCTTTTTCCCAAATACATTTAAAGTCATCAGGAGCATTGTATTCAGAAACAAAGACTTTA 194 Query 38248 TGCCCTTCTTTTGCTTTTTCTCTGCACCATTGCCAAAATTCTGAATGGTTAAAATCGTCT 38307 || ||||||||| |||| | ||||||||| | ||||||||| | ||||||||||| ||| Sbjct 193 TGTCCTTCTTTTACTTTGTTTCTGCACCACTCCCAAAATTCAGTGTGGTTAAAATCATCT 134 Query 38308 TTGTATTTACCTTTTGTTGCTTTAGTGTCGTATGGTGGGTCACAATAAATAATACTATTT 38367 |||||||| || ||||||||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 133 TTGTATTTTCCCTTTGTTGCTTTTGTATCGTAAGGTGGATCACAATAAATAATACTATTT 74 Query 38368 TTAGGTATTTCTAAATCTTGATAACTACTATGTATAAACTTTACACCTTGTATATTTTTA 38427 |||||||| |||| || | |||||||| ||| |||||||||||||||||||| || ||| Sbjct 73 TTAGGTATATCTATTTCATTATAACTACAATGAATAAACTTTACACCTTGTATGTTATTA 14 Query 38428 CTTTGCTTATTT 38439 ||||| |||||| Sbjct 13 CTTTGTTTATTT 2 >seq286088 Length=830 Score = 329 bits (364), Expect = 1e-85 Identities = 268/325 (82%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 38494 TAACTTCCAAACCAAGTAGCACCAAAACTTAATTGTGTACCTGCGTAACCTACAATCCAT 38553 ||||||||||||||||| ||||||||||||||||| || ||||| ||||||||||||||| Sbjct 830 TAACTTCCAAACCAAGTTGCACCAAAACTTAATTGAGTTCCTGCATAACCTACAATCCAT 771 Query 38554 CTTGGATATTGGCTTGGGTATTTTTTAATATCATTATATTTTTCCTCGCTAATTTCTGGA 38613 ||||||| | || | | ||||||||||||||||||||||| || || ||||| ||| Sbjct 770 TTTGGATAATTTTTTTGATTGTTTTTAATATCATTATATTTTTCTTCACTTATTTCAGGA 711 Query 38614 GCTTTGTAATTTGGTTTACTCATTTGGTTTAGTAAAGAAATTACGTATTCGTTTAAATCA 38673 | || ||| |||| |||||| | || | |||| ||| ||||| |||||||| Sbjct 710 GACTTAAAATCATTTTTAGTCATTTCATCTAACAGTGAAACTACATATTCATTTAAATCT 651 Query 38674 GCACCAATTCTTTTTCCTTTTACTTTATCAATCATATTTGCACCACCAACAAAAGGCTCA 38733 | ||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| || Sbjct 650 GAACCAATTCTATTACCTTTAACTTTATCAATCATATTAGCACCACCAACAAAAGGTTCC 591 Query 38734 ACCCAAGTTTCATTTGTTCTACCTTCAATCATTAATGGTAAAATGTATTTTGCTATTCTA 38793 ||||||||||||| ||||| || ||||||| ||| || || | ||||||||||||| Sbjct 590 ACCCAAGTTTCATCGGTTCTGTTTTTTATCATTAGTGGCAATATTTCTTTTGCTATTCTA 531 Query 38794 TTTTTACTTCCTAAATATTTCATAT 38818 |||||||||||||||||||| |||| Sbjct 530 TTTTTACTTCCTAAATATTTGATAT 506 >seq251574 Length=1356 Score = 109 bits (120), Expect = 2e-19 Identities = 162/225 (72%), Gaps = 11/225 (5%) Strand=Plus/Plus Query 38188 TCCTTTTCCCAAATACATTTAAAATCTTCTGGAGCATTGTATTCTGAAACAAATACTTTA 38247 || |||||||| | |||| ||||||| || || ||| || || |||||| ||| || Sbjct 372 TCTTTTTCCCAGACACATATAAAATCATCAGGCATATTATACTCGCTAACAAAAACTATA 431 Query 38248 TGCCCTTC-TTTTGCTTTTTCTCTGCACCATTGCCAAAATTCTGAATGGTTAAAATCGTC 38306 || |||| |||| | |||| ||| ||||| | |||| ||| || ||||| | || Sbjct 432 TGTCCTTGATTTTTCATTTT-TCTACACCAGTTATAAAAATCTTCGTGATTAAATTTATC 490 Query 38307 TTTGTATTTACCTTTTGTTGCTTTAGTGTCGTATGGTGGGTCACAATAAATAATACTATT 38366 || || | || |||| ||| ||| || || ||||| ||||| |||||||| Sbjct 491 CTTATACCCAG-TTGTGTT--TTT------GTAAGGAGGATCACAGTAAATTATACTATT 541 Query 38367 TTTAGGTATTTCTAAATCTTGATAACTACTATGTATAAACTTTAC 38411 ||||||||||||||| || | |||||||| ||| || || ||||| Sbjct 542 TTTAGGTATTTCTAATTCATCATAACTACAATGGATTAATTTTAC 586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155149624633392