Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq211042 122 9e-23 >seq211042 Length=4981 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 52799 GTCATGGTTGCTTTCCGGCCGCAATGGCAGACGCCCTTTAATTCAACCAGTTTATCCGAA 52858 ||||| || ||||| || || || ||| ||| || | |||| || ||||||| | Sbjct 1371 GTCATTGTCGCTTTGCGCCCACAGCTGCAAACGGTTTTGAGTTCAGATAGCTTATCCGCA 1312 Query 52859 ATAGCCAGAAGTCTGGCTGAACCGGGAAATAACTGACCCCGAAAATCTGTTCTTAGCCCG 52918 | |||| | ||||| |||||||||||| | || ||| ||||||| ||||||| || Sbjct 1311 ACGGCCAATAATCTGGATGAACCGGGAAAAAGCTCACCTTGAAAATCCGTTCTTATGCCA 1252 Query 52919 TAACACATAACGGGGATATTGTAATTATCAACCACTCGTGCTAACTGGTCAATTTGCTCT 52978 |||| | ||| || | ||| | |||||| || || || | || || | ||||||| Sbjct 1251 AAACATAAAACCGGCACATTCAGCTCATCAACAACCCGAGCGAGCTCATCGACTTGCTCT 1192 Query 52979 GGTAACAAAAATTGAGCTTCATCAACCAGGACACA 53013 | | || |||||||||||||||||||| |||||| Sbjct 1191 CGCACCAGAAATTGAGCTTCATCAACCAAGACACA 1157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544530783291520