Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq30887 374 3e-99 seq274101 228 3e-55 seq174168 140 1e-28 seq39572 95.1 4e-15 seq271562 86.0 2e-12 >seq30887 Length=1222 Score = 374 bits (414), Expect = 3e-99 Identities = 768/1133 (68%), Gaps = 14/1133 (1%) Strand=Plus/Minus Query 40664 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTGTCTGTCAGATT 40723 |||||||| ||| || | |||||||| | ||||||| | || | ||| |||||| | Sbjct 1220 TGTAGAAGTTCAGACTTTATCTGACATTTACCCGTTTCTCAGTAAC-TGTTTGTCAGGTC 1162 Query 40724 AATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCATCG 40783 | || || | ||| ||| | | ||| | ||||||||| | | || |||||| Sbjct 1161 AGATTTAGTTCAAAAACTTCTTCTTCCAGACTTCTTTTCCATCGATGAGCGTATCCATCG 1102 Query 40784 GTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAACC 40843 ||||||| || ||||| ||||| ||||| || ||||| |||||| | || |||| Sbjct 1101 GTGTTCTCCCGCAGCATATTTTGCCTTGGTGAGTTCGGGCAGTATTATATTTTATCAACC 1042 Query 40844 ACTCATCTAAATCCGCTTGTAATG--TCGTTAAATCCGTATAAATTTTCTTCCTAAATGC 40901 ||| || | || ||| ||| ||| || || |||||| || || | || Sbjct 1041 ACTGGTCAAGGTCTAATTGCAATTCCTCGATAGATTG--ATAAATCTTTTTGCGTAAACA 984 Query 40902 CACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTG 40961 ||||| ||||| || | || || || ||||| || || || || || ||||| || || Sbjct 983 AACTTGATAAAACTCGTTTAGTATCGTCTTATGAAATCGCTCACATATCCCATTTGTTTG 924 Query 40962 GGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATA 41021 || | ||||||| ||||| |||||||| || ||||| | || | || | || ||| Sbjct 923 AGGTGACCTCACTTTGGTTTTGGTATGCTCAATATCATTCAGAGCCATGTATAACTGATA 864 Query 41022 ATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACAT 41081 ||| || | || | ||||||||| || | |||| ||||| || || || | ||| Sbjct 863 ATCATGTTGATCAGCACGGCCACAATACTCTGTACCTCTATCAGTCAAAATACGAAGCAT 804 Query 41082 CGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCACT 41141 ||||| | | ||| || |||| || ||| ||||||||||||| || ||||| | Sbjct 803 AGGTAAGTCGTTTTCCTCATAGAATGGCAATACTCTATCATTCAGCATGTCAGCAGCTGT 744 Query 41142 GATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAA 41201 || | || || ||||||| | || ||| ||||| || || ||||| | ||| Sbjct 743 AATCGGTGTTTTAGTTGTATATAACTTGGCATGAGCCACCTTTGAATAGGTATCCACAAA 684 Query 41202 CGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGA 41261 |||||||| |||| |||||| | ||||||| | || ||||| |||||||||| || Sbjct 683 GGTTTGTTGGTAAACACGACCAATGCCTTTGAAAGTACCAACATAATAAGTATCTTGAGA 624 Query 41262 GCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTT 41321 ||||||||| |||||||| | || ||||| || |||||||| || || | |||||| Sbjct 623 GCCAAGATAACCAGGGTGAGCTGTATCAATCTCTCCACAGGCTTCATCGTCATGTTTCTT 564 Query 41322 ACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTT 41381 || || | ||| ||| |||| || | || || || || | ||| ||||| ||| Sbjct 563 TCGTTCCATTGCTGCTACTTGTGACTCTGTTAGGATGATTCCATCTTCAGCAAC---TTT 507 Query 41382 TTC---CAGGGCGATTAATCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGA 41438 || | ||| | || | ||| |||||| ||||| | || ||| |||||||| Sbjct 506 GTCAGATAAGGCTTTCAAGCGTTGTTTAAAACATGCAAGGTCATTACGCAACCAAATACT 447 Query 41439 ACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCTTAC 41498 | ||| || | || ||| ||||| | || |||| || ||||| ||||| ||| Sbjct 446 TCTTACGCCACTTGGTGAGACAAAAGTACCACGTTTGCGAAGTTCATTACTGGTTCTGGT 387 Query 41499 CTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGC-TCTATTGCCTCAT 41557 || ||| || || | |||| |||| | | || || | || || || | || Sbjct 386 TTGACCATGAGCAGGTTCTTCAAAAGCATATTCAACCAC-TATGGCTTCAATAGTAGGAT 328 Query 41558 CAACACGATTTTTTAAGTTGGGAACGCGTCTATTTTGATTCAGCAATGCTTCAACACCAC 41617 | | | |||||| | ||| || ||||||||| | | | || |||| |||||||| Sbjct 327 CTATTCTATTTTTGAGGTTTGGGGTTCGTCTATTTCGCTCAAATAAGGCTTGAACACCAC 268 Query 41618 CTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGC 41677 ||| ||| ||| || ||| ||||| |||||||| || | ||||| | ||||| Sbjct 267 CTTCTTCATGTGCTGATTTATAGCGATAAAATGTATCGCGTGATAAGCCCATCATTTTGC 208 Query 41678 AGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAA 41737 | |||| ||||| || || |||||||| |||||||| | ||| ||| || ||||| | Sbjct 207 AAGCTTTAGAAACGTTTCCAAGTTCTTCAGCTAAATTCAGTAAGCCGACTTTATGTTTTA 148 Query 41738 TGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGATTGATT 41790 | | | ||||| || | ||| |||||| ||| ||| |||| |||||| Sbjct 147 TAATTTTTTCGTTAGTATGTATCATTAGAGTTACCTATTT-TTTATTTTGATT 96 >seq274101 Length=739 Score = 228 bits (252), Expect = 3e-55 Identities = 336/476 (71%), Gaps = 0/476 (0%) Strand=Plus/Plus Query 40879 GTATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAAC 40938 || || || || || ||||| | |||||| ||||| || | ||| || ||||||||||| Sbjct 155 GTGTATATCTTTTTTCTAAAAGTCACTTGATAAAACTCGTTTAAAATCGTTTTATGGAAA 214 Query 40939 CGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCA 40998 || || || ||||| || || ||||| | || ||| | || || |||||||| Sbjct 215 CGCTCAACAATTCCATTGGTTTGTGGATGTGGAGCCTTGGTTCTGGTGTGATCTATGTCG 274 Query 40999 TTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCT 41058 || | |||| |||||||| || ||||| | || ||||| |||||||| ||||| Sbjct 275 TTAAGAGCTAGATAAAGCTGGTAGTCGTGCTGCTCCGGTTTGCCGCAATATTCTGTTCCT 334 Query 41059 CGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTA 41118 | ||||| | ||| | | ||| | ||||| || ||| || |||| | |||| | Sbjct 335 CTATCAGTGAGTATTCTGAGCATTGAAAAACCATGCTCTTCGTAGAATGGCAGCACTCTT 394 Query 41119 TCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCC 41178 || || || || || || || | || | || || | ||||| ||||||||| || Sbjct 395 TCGTTGAGTATGTCTGCTGCGGTAATCGGTGTTTTATTGGTATACAGTTTTGCATGTGCA 454 Query 41179 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 41238 ||||| ||||| ||||| | ||||||||| || |||| || || || || ||||| || Sbjct 455 ACTTTGCTGTATGTATCTACAAACGTTTGCTGGTAAACCCGCCCGACACCCTTGAGAGTG 514 Query 41239 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 41298 || |||||||| |||||||| ||||| || |||||||| || | ||||| || || ||| Sbjct 515 CCAACATAGAAGGTATCTTGCGAGCCTAGGTAGCCAGGATGCTCTGTTTCGATCTCGCCA 574 Query 41299 CAGGCAATCTCATCTTCTTTCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAG 41354 || || ||||||||||| || || | ||||| || || | ||| |||| Sbjct 575 TGAGCTTCCTGTTCTTCTTTCTTGCGTTCCAGTGCTTGAACTTGCGATTCCGTGAG 630 >seq174168 Length=2856 Score = 140 bits (154), Expect = 1e-28 Identities = 182/247 (74%), Gaps = 16/247 (6%) Strand=Plus/Plus Query 41634 TTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATATT 41693 || |||||| || ||||||||||| || |||||| || ||||||||||||| ||| Sbjct 957 TTTATAACGGTAAAATGTATCTCGTGACAAACCCATTGTCTTACAGGCTTGAGAAACATT 1016 Query 41694 ACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTTTAATGAGAGGGTTGTTAGA 41753 || |||||||| |||| |||||||||||| |||||||||||| | | |||| Sbjct 1017 CCCTAGTTCTTCGGCTAGATTTAATAAACCAACCTTGTGTTTAATTATTTTTTCATTAGT 1076 Query 41754 ATAAAACATGAGAGTTTCCTTTTT-GTTTAGATTGATTTTTGACACTCATATTCTAAACG 41812 || || ||| || ||| ||| || ||||||||| || | | ||| |||| ||||||| Sbjct 1077 ATGAATCATAAGTGTTACCTCTTAAGTTTAGATTAATATGGCA-ACT-ATAT-CTAAACG 1133 Query 41813 GGAAACTCTCACTTTT--------TAGAGTGA----ATTGTCAGATCAAGTCTGATCTTC 41860 || ||| || |||||| || | | | | ||||||||||||||||| |||| Sbjct 1134 GGTAACACTTACTTTTGCAACTTTTATAATTACAAAAGTGTCAGATCAAGTCTGAACTTC 1193 Query 41861 TACATAT 41867 ||||||| Sbjct 1194 TACATAT 1200 >seq39572 Length=15339 Score = 95.1 bits (104), Expect = 4e-15 Identities = 200/287 (70%), Gaps = 15/287 (5%) Strand=Plus/Plus Query 40655 AATATTATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCGTG-T 40713 ||||| | |||||||| ||| || | |||||||||| ||||||| | | ||| | Sbjct 2992 AATATAACCTGTAGAAGTTCAGACTTGATCTGACAGTTAGCCGTTTTG--TGGCGGTGAT 3049 Query 40714 CTGTCAGATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAA 40772 ||||||||||| ||||| | ||| | ||||||| ||| || |||| || |||| | Sbjct 3050 CTGTCAGATTAGATTTG-GTTTACAAACTTTTCCTTCCAGATTTGTTTCCCTTCAATCAT 3108 Query 40773 GGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATG-GTGAT-TA 40830 || | | |||||||| || || || ||||| |||||||| ||||| || ||| | || Sbjct 3109 AGTCTCGAAGGGTGTTCTTCCGCAACATATTTTGCCTTGATGGGTTCGTTGCGTGTTGTA 3168 Query 40831 -TAATACATTAACCACTCATCTAAATCCGCTTGTAAT--GTCGTTAAATCCGTATAAATT 40887 | || ||| ||| ||||| | || ||||| | | ||| | |||| | ||| Sbjct 3169 GTGATGCAT---CCATTCATCAAGGTCGGCTTGCAGTTGCTCGAGCGTTTCGTACAGATT 3225 Query 40888 TTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATG 40934 | || | |||| || || || || || ||||||||||| || || Sbjct 3226 T--TTACGGAATGTGACCTGATAGAACTCCTGTAAGATTGTCTTGTG 3270 >seq271562 Length=725 Score = 86.0 bits (94), Expect = 2e-12 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 41605 GCTTCAACACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATT 41664 ||||| ||||| ||||| || || |||| | || ||||| ||||| ||||| | | | Sbjct 560 GCTTCCACACCGCCTTGTTCTACAGCTTCCTTGTAGCGATAAAATGTCTCTCG--TGAAT 503 Query 41665 --CCCATTACTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAAC 41722 ||||||| ||||||||||| |||| || |||| |||||||| ||| | || | Sbjct 502 ACCCCATTATCTTGCAGGCTTGGGAAACGTTCTGGAGTTGTTCTGCTAGATTGATCAATC 443 Query 41723 CGGTCTTGTGTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTA 41782 || || | | |||| | | || || || |||||| ||| |||||| ||||| Sbjct 442 CGACTTTATATGAGATGACTTTCTCGGTACTATGAATCATGAGGGTTACCTTTTGGTTTA 383 Query 41783 GATTGATTTTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTT 41829 ||| | ||| | | ||| ||| || | || ||| |||||||||| Sbjct 382 AATTAAATTTCGCAATTCA-ATT-AAAGCCGGTAACCCTCACTTTTT 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166151787075792