Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029017.1 Length=73420 Score E Sequences producing significant alignments: (Bits) Value seq121188 131 8e-26 seq282581 82.4 4e-11 >seq121188 Length=15723 Score = 131 bits (144), Expect = 8e-26 Identities = 230/330 (70%), Gaps = 4/330 (1%) Strand=Plus/Plus Query 21512 GTCGTAGGTGAAACGGTCAGGCCATGCACCACGGAAATCTTT-TTCCGAGCATGGGAACT 21570 ||||||||| ||||| || |||||||| ||||||| || || | || || |||| Sbjct 921 GTCGTAGGTAAAACGTTCTGGCCATGCTGGTTGGAAATCCTTCTTATCAACA-GGAAACT 979 Query 21571 TCTCGCACACCGGGTAGACGTTCACCTTCCAGGCACCGGACTCGACTGCTTTGTACAGCG 21630 || ||||| || | |||||||||| ||| ||||| ||||||| ||||| |||| Sbjct 980 CCTTACACACTGGCCAAACGTTCACCTCCCATGCACCAGACTCGATTGCTTGATACACGA 1039 Query 21631 GATCCTTGGCGTTAAACGGTGTACCCGACCAGATGATCATGTTACGGGT-TGGGTGCAAT 21689 || || || || || || ||| |||| | | | || | |||||| | Sbjct 1040 TGTCGTTCTTGTCGAAGGGAGT-CCCATTCAGAATAGTCTTTGACTTTTGTGGGTGAAGA 1098 Query 21690 GCGTAGTCCACCGCCTTGTAAACCGTGTCTTCGATAGACGCAATCACAGTAGGCGAGCGA 21749 |||| || | |||||||||| || || | || ||| ||| |||| || || Sbjct 1099 GCGTGGTGTAAACCCTTGTAAACAGTATCGTTAATCTTCGCCATCGCAGTTGGAGACTTC 1158 Query 21750 GCATCTTCGTCTGAAACCAGGTCATCGAGAACCGCAAGCTGGGGGCGCTTACCCATCTCC 21809 |||||||| ||||| | || |||||||||||| |||||| || || ||||| | | Sbjct 1159 GCATCTTCATCTGAGATCAAGTCATCGAGAACTGCAAGCGAAGGTCGTTTACCAAAGATC 1218 Query 21810 TTCGCACCACGGACACCAGTCTTGGCACCG 21839 |||| |||||||| ||||| |||||||||| Sbjct 1219 TTCGTACCACGGATACCAGACTTGGCACCG 1248 >seq282581 Length=1216 Score = 82.4 bits (90), Expect = 4e-11 Identities = 225/345 (65%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 65559 CTTTGACTCCGGTACGCCGCCTGCTGTGAAGCAGATGCGGCACAAACTGCTCATGGCAAA 65618 ||| ||||| || || |||||||||||||||| | || |||| || || |||| || Sbjct 696 CTTCGACTCAGGAACCGGGCCTGCTGTGAAGCAGCTTCGATACAAGCTCCTGTTGGCCAA 637 Query 65619 TGCCGGTGCAGTGAACCTGGTGATCGACGAAATCGGCTCGAACCTCACGGGTCAGATCGA 65678 ||| | | ||| | ||| || || ||||| || ||||| || | | || Sbjct 636 GAATGGTTCGATCAACTTCCAGATGGATGAGATCGGTTCCAACCTTCAAGGCAACACTGA 577 Query 65679 AGTGTTGAACACCTTCCTCGAACTCTACGACGTGGGCGCCATCAAGCAAAAGCTGGTGAA 65738 |||| | ||||| | || || || ||||| | || ||||| ||||| || || Sbjct 576 AGTGCTCAACACACTTCTGGAGCTATACGATCTTGGTAAAATCAAAGCCAAGCTCGTAAA 517 Query 65739 GAACACGCAGGACAACGTGCGAGGCGAGGAAATCCGAGGCAAGACGCCTACCAACATGAT 65798 || || | |||||| | || || ||| ||| || ||| ||| | ||| | | Sbjct 516 AAATACCCCGGACAATGAACGGGGTATGGACATCGTGGGTTCGACACCTTCGAACGTATT 457 Query 65799 GTTGTTCGGTACTCCGACCAAGCTGCTCAACGGCAGCAAGACGGAAGAGGAGTTCAACTC 65858 | ||||||| || | ||||| | |||| || | || |||||||| |||| Sbjct 456 GATGTTCGGCACCAGCTCAAAGCTCTTTGACGGTGCTAAAATTGAGGAGGAGTTTTACTC 397 Query 65859 CATGTTGGAAACTGGTTACGCTCGCCGGTCCTTCTTCGGACTCGG 65903 | | |||| || ||||| ||||| || | |||||||| |||| Sbjct 396 CTTCTTGGCGACGGGTTATGCTCGACGCTGTTTCTTCGGGATCGG 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 233993221702856