Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029057.1 Length=134742 Score E Sequences producing significant alignments: (Bits) Value seq55518 129 5e-25 >seq55518 Length=4844 Score = 129 bits (142), Expect = 5e-25 Identities = 280/409 (68%), Gaps = 20/409 (5%) Strand=Plus/Minus Query 7485 GCTCAAACACCTTTTGATAAAGTATTAGGTAGCTCTAATATCCGTAAT--TTAAAGTATG 7542 ||||||| ||||||| | | |||||| |||||||| | ||| |||| ||||| Sbjct 4542 GCTCAAATACCTTTTAACATTACTTTAGGTGCATCTAATAT--GAAATGGTTAAGGTATG 4485 Query 7543 AGTGGATTTGGGAAAAGACAGCAGCAACTGGGCATCTTAATGCAAAGAAAGCCCCTATGA 7602 | ||||||||||| || || || || || ||||| ||||| || || |||| || Sbjct 4484 AATGGATTTGGGAGAAAACTAACGCTACAGGTCATCTAAATGCGAAAAAGATGCCTAGGA 4425 Query 7603 AATCACACGAGAATATCTTGGTGTTTTATAAGAAACTTCCTTTGTATAACCCACAAAAGA 7662 || | ||||| ||| | || | ||||| || || | ||| ||||| |||||||| | Sbjct 4424 AAGCTCACGAAAATGTAATGATTTTTTACAATAAGTTACCTACTTATAATCCACAAAAAA 4365 Query 7663 CTACAGGACATAAACCAGCTAA---TACCTACACAAAGCATACAGGTGATGGTGAATTGT 7719 | |||||||||||||| ||||| || |||||| || | | ||||||| | Sbjct 4364 CAACAGGACATAAACCTGCTAATTTTAGAACAACAAAGGCTA---ATTCTTGTGAATTAT 4308 Query 7720 ATGGT-AAGACTAAACTTGGA--ATTTCTGGAGG-TAAACAGACTGATCGTTATCCTCGT 7775 ||||| ||| | ||| | | | ||||||| || |||||| || ||||| | Sbjct 4307 ATGGTAAAGTCGAAAAAGGAAACACGACTGGAGGTTATACAGACAGA----TATCCAAGA 4252 Query 7776 GATGTGTTGAAGTTTGCAAGTGATAAGCAG-AAATTAAATATACATTCTACACAGAAACC 7834 ||||| | ||| | |||||| ||| ||| ||||| ||||| ||| || || || Sbjct 4251 AGCGTGTTAATTTTTCCTTCTGATAAACAGAAAAGTAAAT-TACATAGTACTCAAAAGCC 4193 Query 7835 GCTAGAACTGTTACGGTATATGATTCGAACTTATACAAATGAAGGTGAT 7883 | | | | ||| |||| | || ||||||||||||||||| ||| Sbjct 4192 TTTGGCATTATTAGAGTATTTTGTTAAGACTTATACAAATGAAGGGGAT 4144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429533379799128