Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq55518 89.7 5e-13 >seq55518 Length=4844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 112322 TTGAGGATTGTATGTAGGTAGTTTTTTATAAAACACAAGAATGTTTTCATGATTTTTTAA 112381 ||| ||||| || ||||||| || || ||||| | | | ||||| ||| ||| Sbjct 4369 TTGTGGATTATAAGTAGGTAACTTATTGTAAAAAATCATTACATTTTCGTGAGCTTTCCT 4428 Query 112382 AGGCATCTTTTTAGCATTCATAAAACCTGTAGCATTATTTTTCTCCCAAATTAATTCATA 112441 |||||||||||| ||||| | | ||||||||| ||| ||||||||||||| ||||||| Sbjct 4429 AGGCATCTTTTTCGCATTTAGATGACCTGTAGCGTTAGTTTTCTCCCAAATCCATTCATA 4488 Query 112442 ACGAAACATTTTTAAATTA 112460 | ||| ||| | |||| Sbjct 4489 CCTTAACCATTTCATATTA 4507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450394827242880