Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029101.1 Length=72192 Score E Sequences producing significant alignments: (Bits) Value seq121188 131 8e-26 >seq121188 Length=15723 Score = 131 bits (144), Expect = 8e-26 Identities = 355/535 (66%), Gaps = 14/535 (3%) Strand=Plus/Minus Query 9085 CGGTGCCAAGACTGGTGTCCGTGGTGCGAAGGAGATGGGTAAACGTCCGCAGCTTGCGGT 9144 |||||||||| ||||| |||||||| ||||| | |||||||| || |||||| || Sbjct 1248 CGGTGCCAAGTCTGGTATCCGTGGTACGAAGATCTTTGGTAAACGACCTTCGCTTGCAGT 1189 Query 9145 ACTGGATGACTTGGTTTCGGACGAAGATGCTCGCTCGCCCACTGTCATCGCAGCCATCGA 9204 || ||||||||| | || || |||||||| || || |||| || || || | Sbjct 1188 TCTCGATGACTTGATCTCAGATGAAGATGCGAAGTCTCCAACTGCGATGGCGAAGATTAA 1129 Query 9205 GGACACGGTGTACAAGGCAGTGGACTATGCACTGCACCCGAAGAAGAACATGATCAT-CT 9263 || || || ||||||| | || | || || ||||| | ||| | || || || Sbjct 1128 CGATACTGTTTACAAGGGTTTACACCACGCTCTTCACCCACAAAAGTCAAAGACTATTCT 1069 Query 9264 GGTCGGGTACACCGTTCAACGCGAAGGATCCAT--TGTACAAAGCAGTGGAGTCTGGTGC 9321 | ||| || || ||| || ||| || ||| |||| ||||| | ||||||||||| Sbjct 1068 GAATGGG-ACTCCCTTCGACAAGAACGA--CATCGTGTATCAAGCAATCGAGTCTGGTGC 1012 Query 9322 TTGGAAGGTCAACGTCTACCCGGTATGTGAGCGGTTCCCCTGCTCGCGGGAAG-AGTTCC 9380 ||| |||| ||||| | || || ||| || ||| || || | |||| | |||| Sbjct 1011 ATGGGAGGTGAACGTTTGGCCAGTGTGTAAGGAGTTTCC-TGTTGATAAGAAGGATTTCC 953 Query 9381 GTGGTGCATGGCCTGACCGATTCACCTACGACTTCGTGTTGCAGAAGTACACCCTGGCCA 9440 |||||||| || || || ||||||||| || || | ||| | | || Sbjct 952 AACCAGCATGGCCAGAACGTTTTACCTACGACCAGTTGAAAGAGGATTACGACTTCTTCA 893 Query 9441 AGAAGGCAGGGAAGATCGAGACGTTCAACCAAGAGCTTATGCTCCAGATCATGTCTGACG 9500 || | ||| || | ||| ||||| || ||||||||||| | ||| | ||| | Sbjct 892 AGCAACAAGGTAAACTTGAGTCGTTCCGTCAGGAGCTTATGCTTCGGATTCAGGATGATG 833 Query 9501 AAGACCGGCTCATCCAGGATGGTGAGGTGGCTTGGTACATGCGACGCAA---CGTGCTGG 9557 | || | | ||||| ||||| | | ||||| | | ||| || | | || | Sbjct 832 AGTCTCGTTTGGTTCAGGAAGGTGACATCGGTTGGTTC---CAACGGAAACACATCCTTG 776 Query 9558 ACAACAAGAAGCGGTACAACTTCTACATCACCACTGACTTCGCTACCTCTGCGAA 9612 ||||||||| || || |||||||||||||||||||| || || || |||| Sbjct 775 CGAACAAGAAGGATTATAAGTTCTACATCACCACTGACTTTGCCACGTCGTCGAA 721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230077444100328