Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq159884 116 3e-21 >seq159884 Length=3827 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 14/242 (6%) Strand=Plus/Minus Query 126160 GTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTTC 126219 |||| || || || ||||| |||||||| ||||| ||||| | ||||| ||| ||||| | Sbjct 2054 GTGTTAGCAACGCGTAACTGGCAATATTAAAAGGTACACCCAGAAATAAATCGGCACTAC 1995 Query 126220 TTTGATATAATTGACAATTTAATTT---ACCCTCTTGTACGTAAAATTGAAACATTGTGT 126276 ||| |||| ||| ||| | | ||| | | || |||||||||||||| | |||| Sbjct 1994 GTTGGTATACTTGGCAACTGAGTTTGTTATCATCGCTGACGTAAAATTGAAATAACGTGT 1935 Query 126277 GGCAAGGTGGTAATGCCA-----TTGAAT-----CGATTTCAGTAGGATTCCATGCTGAA 126326 |||||||||||||| ||| ||| || ||||||| | ||| ||||| || ||| Sbjct 1934 GGCAAGGTGGTAAT-CCAGAGATTTGCATGGCGGCGATTTCCGCAGGGTTCCACGCAGAA 1876 Query 126327 ACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTGATTTTAATTGA 126386 ||||| || | || | |||||| ||| |||| | || || ||| |||||| Sbjct 1875 ACAATTAATCGCCTTGACTGCGGATTGTGTTTTATTTCATTAATTACCCATTGCAATTGA 1816 Query 126387 TC 126388 || Sbjct 1815 TC 1814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407161152063512