Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq61270 131 1e-25 >seq61270 Length=8000 Score = 131 bits (144), Expect = 1e-25 Identities = 207/294 (70%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 118374 AAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTT--GTTTATGGATAGTG-T 118430 ||| || |||||||| ||||| || ||||||| | |||| | || | || || | Sbjct 7699 AAAGTCATCAAACTTGAAGTCCTCGATATTTTCCA---CCTTCCGCTTGAGCGTAATGGT 7643 Query 118431 GGGAAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATA 118490 |||||||| | ||||||| | | || | ||| | | || ||| || |||| Sbjct 7642 AGGAAACGGACGGGGCTCCCGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTATA 7583 Query 118491 GACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGC 118550 |||||| |||||||| | | |||||| || || || || |||| || |||| || || Sbjct 7582 GACATGGGCATCCCCCAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGGGC 7523 Query 118551 AATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTC 118610 |||||| || | | |||||||| | ||||| || ||||| |||||||| || Sbjct 7522 CATCATGATGGTTAGAAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATATC 7463 Query 118611 TGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 || || | ||| |||| ||||||||| ||||||||||| || ||||| ||||| Sbjct 7462 AGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCCGTTCGCCACATAGAACTG 7409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413018874747424