Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11950 165 2e-35 seq271769 154 3e-32 seq78081 152 1e-31 >seq11950 Length=2906 Score = 165 bits (182), Expect = 2e-35 Identities = 156/199 (78%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 210917 AGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCC 210976 ||||||||||||||| ||||| || |||| | ||| | ||||| || || |||||||| Sbjct 1086 AGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCC 1027 Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 |||||||| | || || ||||| || |||| |||||||||||| || ||||| || Sbjct 1026 AGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTT 967 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 ||| ||||| |||||||| || |||||||| |||||||| ||||| || || ||||| Sbjct 966 CACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGT 907 Query 211097 CTTTACAAACACCTGCATT 211115 || ||||| | ||||||| Sbjct 906 TTTAACAAAGATCTGCATT 888 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | ||||||||| ||||| ||||| |||||||| || | ||||| | || Sbjct 876 TCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACC 817 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 || || ||||||||||| ||||| || || || || || || || |||| ||| ||||| Sbjct 816 GTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 757 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || ||||| || ||||| || |||||||| ||| ||||| || |||||||| Sbjct 756 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGAT 697 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || || ||||| ||||| | |||||| Sbjct 696 GGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 Score = 156 bits (172), Expect = 1e-32 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| || || || || ||||| ||||| || ||||| ||||| ||||| | || Sbjct 429 TCCACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAG 370 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | |||||||| || ||||| || || ||||| || || ||||| || || || | Sbjct 369 AGTACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGAT 310 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||||| || ||||||||||| || ||||| || |||||||| ||| |||||||| Sbjct 309 TCCTTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTC 250 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || || || || |||||||| || || | |||||| Sbjct 249 TAGTGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 154 bits (170), Expect = 3e-32 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | |||||| ||||| || || |||||||| || || | ||||| Sbjct 1338 ACGAAGACGCAGGACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 1279 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || |||||||| | || || || || || |||| ||| Sbjct 1278 GCGACCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCC 1219 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| |||||||||||||| || || ||||| || |||||||| |||||||| || Sbjct 1218 TTCTTTGTCCTGGATCTTGGTCTTGACATTTTCAATAGTGTCAGATGGCTCAACCTCAAG 1159 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || || || || ||||| ||||| || || | ||||||| Sbjct 1158 AGTAATGGTTTTGCCAGTGAGGGTCTTGACGAAAATCTGCATT 1116 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || |||||||| ||||| || || || ||||| || |||||||| | ||||| Sbjct 653 CGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTG 594 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || ||||||||||| ||||| || || || || || || || |||| ||| Sbjct 593 CGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCC 534 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| || ||||| || ||||| || |||||||| ||| |||||||| || Sbjct 533 TCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGT 474 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || || || || |||||||| || || | |||||| Sbjct 473 GTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| || |||||||| ||||| || || || || || || || || || | ||| || Sbjct 197 CGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTA 138 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| || || || || |||||||| || || ||||| || || | |||| Sbjct 137 CGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCT 78 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| || || || || || || ||||| || ||||||||| Sbjct 77 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGA 18 Query 211074 GTGATCGTCTTTCCCGT 211090 ||||| |||||||| || Sbjct 17 GTGATGGTCTTTCCAGT 1 >seq271769 Length=1390 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||||| |||||| || ||||||||||| |||||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || || || || || |||| ||||||||| ||||||||||| |||||||| ||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||||| || ||| || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 211107 ACCTGCAT 211114 | ||||| Sbjct 668 ATTTGCAT 661 >seq78081 Length=4256 Score = 152 bits (168), Expect = 1e-31 Identities = 150/191 (79%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| ||||| || |||| |||||| | |||||| || |||||||| || || |||| Sbjct 2975 CTTTTTGAATGTTGTAGTCCGAAAGGGTTCGTCCATCCTCGAGCTGCTTTCCGGCAAAGA 3034 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT-TTCACGTTT 211043 | | || ||||| || ||||| | ||| ||||| || ||||| ||| || || || ||| Sbjct 3035 TCAAACGCTGTTGATCTGGAGGGATTCCCTCCTTATCTTGGAT-TTTGGTCTTAACATTT 3093 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| |||||| ||||||||||| || || || || |||||||| ||||| || Sbjct 3094 TCGATGGTATCAGAGGGCTCAACCTCGAGGGTAATGGTTTTACCCGTGAGGGTCTTAACG 3153 Query 211104 AACACCTGCAT 211114 || | |||||| Sbjct 3154 AAAATCTGCAT 3164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1154865580512840