Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq11950 132 3e-26 seq78081 123 2e-23 >seq11950 Length=2906 Score = 132 bits (146), Expect = 3e-26 Identities = 158/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || |||||||| || || || || || |||||||| || ||||| | | Sbjct 888 AATGCAGATCTTTGTTAAAACTCTTACCGGGAAGACCATCACTCTTGAGGTTGAGCCATC 947 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||||| | | || || || | || ||||| ||||| | || ||||| | Sbjct 948 CGACACCATTGAAAATGTGAAGACTAAGA-TTCAAGACAAGGAAGGAATTCCCCCAGACC 1006 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || || ||||| ||||| || || | || || || || |||| Sbjct 1007 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTTGAGGATGGCCGAACCTTGTCGGACTACA 1066 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| |||||||||||||| || ||||||||| Sbjct 1067 ACATTCAAAAAGAGTCCACTTTGCATTTAGTT 1098 Score = 127 bits (140), Expect = 1e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || ||||| || ||||| || ||||| | | Sbjct 1116 AATGCAGATTTTCGTCAAGACCCTCACTGGCAAAACCATTACTCTTGAGGTTGAGCCATC 1175 Query 23670 GGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| |||||| | | || || || | | ||||||||||| | || ||||||| Sbjct 1176 TGACACTATTGAAAATGTCAAGACCAAGA-TCCAGGACAAAGAAGGAATTCCCCCAGATC 1234 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || || ||||| || ||||| || || | ||||| | ||| |||| Sbjct 1235 AGCAGCGTTTGATCTTCGCCGGAAAGCAACTCGAGGATGGTCGCACCCTCTCCGACTACA 1294 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || || ||||| Sbjct 1295 ACATCCAGAAGGAATCCAC 1313 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || ||||| || || || || || ||||| ||||| || || ||||| || | Sbjct 204 AATGCAAATCTTCGTCAAGACTCTAACTGGCAAAACAATCACACTAGAGGTTGAGGCCTC 263 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | | || || || || |||||||| | || |||||||| Sbjct 264 AGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATCCCCCCAGATCA 323 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || |||||||| || ||||| ||||| | || ||| | ||||||||| Sbjct 324 ACAGCGTCTCATCTTTGCCGGAAAGCAACTTGAAGATGGCCGTACTCTCTCCGATTACAA 383 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || ||||| | ||| | ||| | ||| | || |||||| Sbjct 384 CATTCAAAAGGAATCCACCCTTCATCTCGTTCTTAGGCTTCGTGGAGGA 432 >seq78081 Length=4256 Score = 123 bits (136), Expect = 2e-23 Identities = 146/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| ||||||||||| ||||| || || ||||| ||||| || | Sbjct 3164 ATGCAGATTTTCGTTAAGACCCTCACGGGTAAAACCATTACCCTCGAGGTTGAGCCCTCT 3105 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | |||| || |||| | || || || || | || |||||||| Sbjct 3104 GATACCATCGAAAATGTTAAGACCAAAA-TCCAAGATAAGGAGGGAATCCCTCCAGATCA 3046 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 ||||||||| || |||||||| || || || || || | ||| | |||| | || ||| Sbjct 3045 ACAGCGTTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGAACCCTTTCG--GACTAC 2988 Query 23788 AACATACAAAAAG 23800 ||||| ||||||| Sbjct 2987 AACATTCAAAAAG 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336820648696928