Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq11950 143 6e-29 seq271769 118 3e-21 >seq11950 Length=2906 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || || |||||||| || || || ||||| ||||| | ||| ||||| | || || Sbjct 653 CGGAGCCTAAGGACAAGATGAAGGGTAGATTCCTTTTGAATATTATAATCAGACAGGGTG 594 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || ||||||||||| |||||||| || || || || || || || ||||| || Sbjct 593 CGACCGTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCC 534 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| || || ||||||||||||| || || |||| Sbjct 533 TCCTTGTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAGT 474 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | ||| || | ||| | ||||||| Sbjct 473 GTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 432 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| || || || || || || |||||||| ||||| | |||||||||| | ||| Sbjct 426 ACGAAGCCTAAGAACGAGATGAAGGGTGGATTCCTTTTGAATGTTGTAATCGGAGAGAGT 367 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || || ||||| || || ||||| || || || || || Sbjct 366 ACGGCCATCTTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGTTGATCTGGGGGGATTCC 307 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || |||||||| ||| || || ||||||||||||| || || |||| Sbjct 306 TTCTTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACCTCTAG 247 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || ||||| || | ||| || | ||| | ||||||| Sbjct 246 TGTGATTGTTTTGCCAGTTAGAGTCTTGACGAAGATTTGCATT 204 Score = 138 bits (152), Expect = 3e-27 Identities = 150/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 |||||| |||||||| | ||||| || | ||| |||| ||||| || || ||||| || Sbjct 1086 AGTGGACTCTTTTTGAATGTTGTAGTCCGACAAGGTTCGGCCATCCTCAAGTTGCTTGCC 1027 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 ||||||||| | || || ||||| || ||||| |||||||||||||| ||||| ||| Sbjct 1026 AGCGAAGATCAAACGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGAATCTTAGTCTT 967 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 |||| ||| |||||||| || | || || || | ||||| ||||| || || | ||| Sbjct 966 CACATTTTCAATGGTGTCGGATGGCTCAACCTCAAGAGTGATGGTCTTCCCGGTAAGAGT 907 Query 225696 TTTTATGAACACTTGCATT 225714 ||| | || | |||||| Sbjct 906 TTTAACAAAGATCTGCATT 888 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| || |||||||| || || || ||||| || || | |||||| |||| | ||| Sbjct 197 CGAAGCCTAAGGACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAGTCGGAAAGAGTA 138 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| || || || ||||| |||||||| || || ||||| || || || ||| Sbjct 137 CGACCATCTTCCAGTTGTTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGGGGGATTCCT 78 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||| ||| || || || || || | || || || | Sbjct 77 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATCGTATCAGATGGCTCGACCTCGAGA 18 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| ||||| || || Sbjct 17 GTGATGGTCTTTCCAGT 1 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 |||||| || | ||| ||||| || || ||||| | || || |||| || || | || Sbjct 876 TCTCAGAACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGACAGGGTGCGACC 817 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 || ||||||||||| |||||||| || || || || || || || ||||| || ||||| Sbjct 816 GTCCTCTAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATTCCCTCCTT 757 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| ||||| ||| || || ||||||||||||| || || || | ||||| Sbjct 756 GTCTTGAATCTTAGCCTTGACGTTCTCAATGGTGTCTGAGGCCTCAACTTCAAGAGTGAT 697 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || | || || | || | ||||||| Sbjct 696 GGTCTTTCCAGTAAGGGTCTTGACAAAAATTTGCATT 660 >seq271769 Length=1390 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | || | ||||| || |||||||| ||||||||||| Sbjct 848 TTCTGGATGTTGTAGTCGGAGAGGGTCCGTCCATCCTCAAGCTGCTTGCCAGCGAAGATC 789 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || || || || ||||| |||||||| || |||||||| |||||| ||| Sbjct 788 AAACGCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGGATCTTGGTCTTCACGTTCTCG 729 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 ||||| || |||| ||||| || | ||||| ||||||||||| | || || | ||| Sbjct 728 ATGGTATCGGAGGGCTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 669 Query 225706 ACTTGCAT 225713 | |||||| Sbjct 668 ATTTGCAT 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1188121347819504