Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq61270 156 3e-33 >seq61270 Length=8000 Score = 156 bits (172), Expect = 3e-33 Identities = 461/709 (65%), Gaps = 10/709 (1%) Strand=Plus/Minus Query 29528 GGGTGAGGGTCGTAGCCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCC 29587 |||||||| ||||| || | | || || || ||| ||||| || | | ||| Sbjct 7725 GGGTGAGGATCGTATCCATGTATTTCAAAGTCATCAAACTTGAAGTCCTCGATATTTTCC 7666 Query 29588 ACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTC 29647 ||| ||| || | | | | || ||||| || | |||||||| || | ||| ||||| Sbjct 7665 ACCTTCCGCTTGAGCGTAATGGTAGGAAACGGACGGGGCTCCCGCTTCAACTGC-TCCTC 7607 Query 29648 -AGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCC 29706 || | | ||||||| | ||||| || ||||| ||||||| || | ||| || || Sbjct 7606 CAGGGCATTAACGTGGTTATTATAGACATGGGCATCCCCCAGGGAATGTATAAAGTCCCC 7547 Query 29707 CGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTT 29766 || | || || || || || ||||||||| || || || | |||||||| ||||| Sbjct 7546 TGGCTTAAGACCCGTCACATGGGCCATCATGATGGTTAGAAGGGCATAGCTGGCAATGTT 7487 Query 29767 AAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC 29826 ||| || || || || ||||| || | || | ||| || | ||||| || ||||| || Sbjct 7486 AAATGGTACACCAAGACCCATATCAGCAGAGCGCTGATACATTTGGCAAGAAAGCTCCCC 7427 Query 29827 GT-CGCTCACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAG 29884 || ||| ||| || ||||| ||| | || ||||||||||| | |||||| | | | Sbjct 7426 GTTCGC-CACATAGAACTGT-ACAAGACAGTGGCACGGAGGCAAGGCCATTAAATGAAGA 7369 Query 29885 TCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGG 29944 ||| | | |||||| ||||||| | || || | || || || || || | ||| Sbjct 7368 TCTCTCGCGTTCCAAGCACACATCACCATACGACGATCGTCCGGATTACTCTTAATGGTC 7309 Query 29945 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNN 30004 || | | || ||||||||||| ||| |||| | |||||||| Sbjct 7308 TCAATAACCTTCCCAAGCTGATCCACACCCTTCCCAGCGTAGTCTGCATGCATGGTATCA 7249 Query 30005 NNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30064 | || |||||||| || ||||| || ||||| || | ||||| |||||| Sbjct 7248 TACTCCGCGCCAAAGTGCCTCCATTGAAACCCATAGACCGGCCCTAAATCTCCTTCTTCC 7189 Query 30065 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30124 | | | |||||| | ||||| | | | | || || |||||||||| Sbjct 7188 CGTTCTTTAAAGCCCATGGAGTCCAGATATGCCCGAGAGGAATTCCCGTCCCAGATGCGC 7129 Query 30125 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30184 || ||||| | ||| |||| ||||| || || | | |||||| | || ||| Sbjct 7128 ACATTTTTCTCCTTCAACTCATTGGCATTTGTTGAGCCCCGAATGAACCAAAACAACTCT 7069 Query 30185 TCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAAA 30231 || ||| || | || ||||| |||| || |||||||| ||||| Sbjct 7068 TCTGCGA--TCCCACGAATGAAGACTTTCTTTGTTGTGAGGAGAGGAAA 7022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404734517897776