Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq28030 196 4e-45 seq285389 113 4e-20 >seq28030 Length=5412 Score = 196 bits (216), Expect = 4e-45 Identities = 595/912 (65%), Gaps = 8/912 (1%) Strand=Plus/Plus Query 4233 TCGGACTTTGAACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTA 4292 |||| |||||| ||||| ||||| ||||| ||| ||| || ||||| || Sbjct 1226 TCGGGCTTTGACATCACACCGGCCTTTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTT 1285 Query 4293 GTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGT 4352 || || || || | ||||||||||||||||| ||||| || || ||||| Sbjct 1286 GTCTTTCCATCCAGGGAAATATTTTCCATAAAGTCAAAGGGGTTTTCATTATTGTAGATC 1345 Query 4353 TTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATG 4412 || || | || ||||||| | ||| || || ||||||| || ||||| |||| Sbjct 1346 TTGGGGCAGTCAAGCTCTACAAGGAGTCGATCCGCGACAAATTTGATGTACTGCACCATG 1405 Query 4413 AGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCT 4472 || || || ||||| | | || ||| || || || | ||| | ||||| || Sbjct 1406 GAATCACAATTCATTCCGAGCATTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCG 1465 Query 4473 ATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG 4532 || | ||||| ||| | || || | || || ||| || ||||| | | Sbjct 1466 ATCGCAACGGCATCTCGAACGATTTCCGTGATCCGCTCCACAGAGGGCTTATTAGCGAGA 1525 Query 4533 TATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCG 4592 | || |||| | || ||||| || || | |||||||| | ||| |||||| Sbjct 1526 TGTCTGAACATGAGGCAGGCAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCG 1585 Query 4593 TTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAAT 4652 ||||| ||||| | || ||||| | || | ||| || ||||| || || | ||||| Sbjct 1586 TTAGAGAACGTGAGCCCAGGCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAG 1645 Query 4653 GACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA- 4711 ||||| || ||||| || ||||| ||||| ||||| |||| | ||| || || || Sbjct 1646 GACCCGGAGAAGAAAATCCCTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAA 1705 Query 4712 GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAA 4770 || | | | || |||| ||| ||||| ||| || || | || ||| |||| Sbjct 1706 GCAGAGGTAGACTGCG-TCCACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAA 1764 Query 4771 TTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTA 4830 | ||| | |||||||| | || ||||| | || | ||||| ||||| | Sbjct 1765 GT-TGTCCAGGGCGTTAAAGAGGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAA 1823 Query 4831 TTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGC 4890 | |||| ||||||||||| || || ||||| || || | |||||| || || |||| Sbjct 1824 TGAGTAATGAGTACATTTCAGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGC 1883 Query 4891 ATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTA 4950 ||| ||||| || ||||| || || || | || || | ||| || || || | Sbjct 1884 ATCGCGCTTCAGTAACTTGGACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGA 1943 Query 4951 TACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA---CTGTTCGTCAG 5007 | |||||| || || ||||| || | ||||||||||| || || || ||||||| Sbjct 1944 TTCCGTCAGATGCAGCGAAAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCAT 2003 Query 5008 GCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067 | | | | || ||| | | ||| || | | ||| || ||||| || ||||| | Sbjct 2004 TCAGACGCTCTTCCCAATCTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGA 2063 Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGA 5127 | || | |||||||||||||| ||| || || || || || || ||||| | || Sbjct 2064 AGCTGGCAACGGCTTTTTTGTACATGTTCCAGATGTCTGGGTATTGGATGGGAAGGACGA 2123 Query 5128 CAAATCTGTTGT 5139 |||| | ||||| Sbjct 2124 CAAAGC-GTTGT 2134 >seq285389 Length=790 Score = 113 bits (124), Expect = 4e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||| |||||||||||| || |||| |||||| |||||||| ||||| |||| | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 || || | |||||||| ||||| |||||||| | ||| | | |||||| || | || Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 4368 GCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATT 4427 | || | | || |||| ||| || |||| ||| || |||| || || | || || Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 4428 CCAATTAATCTCACAGGTAG 4447 |||||||| || || ||||| Sbjct 759 CCAATTAAACTTACCGGTAG 778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425547449829128