Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq61270 152 4e-32 >seq61270 Length=8000 Score = 152 bits (168), Expect = 4e-32 Identities = 440/670 (66%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 27060 CTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 27119 ||| ||||| || | | |||||| ||| || | | | | || ||||| || | ||| Sbjct 7687 CTTGAAGTCCTCGATATTTTCCACCTTCCGCTTGAGCGTAATGGTAGGAAACGGACGGGG 7628 Query 27120 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCC 27179 ||||| || | ||| || ||| | | ||||| | ||||| || || || || Sbjct 7627 CTCCCGCTTCAACTGCTCCTCCAGGGCATTAACGTGGTTATTATAGACATGGGCATCCCC 7568 Query 27180 CAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 27239 ||||| || | ||| || || || | || || || || || ||||||||| || || Sbjct 7567 CAGGGAATGTATAAAGTCCCCTGGCTTAAGACCCGTCACATGGGCCATCATGATGGTTAG 7508 Query 27240 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 27299 || | |||||||| |||||||| ||||| || || ||||| || | || | ||| || Sbjct 7507 AAGGGCATAGCTGGCAATGTTAAATGGTACACCAAGACCCATATCAGCAGAGCGCTGATA 7448 Query 27300 GAGCTGACACGAGAGCTCTCCAT-CGCTTACGTAAAACTGACATATGGC-GTGGCACGGA 27357 | || || || ||||| || | ||| || || ||||| | | | | |||||||||| Sbjct 7447 CATTTGGCAAGAAAGCTCCCCGTTCGCC-ACATAGAACTGT-ACAAGACAGTGGCACGGA 7390 Query 27358 GGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCT 27417 || | ||||| | | ||| | | |||||| || |||| | || || | || Sbjct 7389 GGCAAGGCCATTAAATGAAGATCTCTCGCGTTCCAAGCACACATCACCATACGACGATCG 7330 Query 27418 TCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAG 27477 || || || || | ||| || | | || ||||||||||| ||| |||| | | Sbjct 7329 TCCGGATTACTCTTAATGGTCTCAATAACCTTCCCAAGCTGATCCACACCCTTCCCAGCG 7270 Query 27478 TAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACC 27537 |||||| | |||| ||||| || || || ||||||||||| ||||| || ||| Sbjct 7269 TAGTCTGCATGCATGGTATCATACTCCGCGCCAAAGTGCCTCCATTGAAACCCATAGACC 7210 Query 27538 GGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAA 27597 || || | ||||| ||||||| | | |||||| | ||||| | | | | || Sbjct 7209 GGCCCTAAATCTCCTTCTTCCCGTTCTTTAAAGCCCATGGAGTCCAGATATGCCCGAGAG 7150 Query 27598 CCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCT 27657 || |||||||||| || ||||| | ||| |||| ||||| || || Sbjct 7149 GAATTCCCGTCCCAGATGCGCACATTTTTCTCCTTCAACTCATTGGCATTTGTTGAGCCC 7090 Query 27658 CTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGA 27715 | | |||||| | || ||| || ||| || | || ||||| |||| || |||| Sbjct 7089 CGAATGAACCAAAACAACTCTTCTGCGA--TCCCACGAATGAAGACTTTCTTTGTTGTGA 7032 Query 27716 GGAGGGGAAA 27725 |||| ||||| Sbjct 7031 GGAGAGGAAA 7022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368207455652696