Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030918.1 Length=36629 Score E Sequences producing significant alignments: (Bits) Value seq273771 102 2e-17 >seq273771 Length=2308 Score = 102 bits (112), Expect = 2e-17 Identities = 139/185 (75%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 20214 ACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACCTCGGCGTCTACGGACCGCTC 20273 ||||| ||||| | || | ||||||||||||||| ||||||||| |||| | ||| || Sbjct 2305 ACCGTTGGCGTCGATCGCAACGACATCGAGGACGATAACCTCGGCATCTATGCACCTCTG 2246 Query 20274 ATGCAGGAAATGGG-GCGTGCTGCCGGCGC-GCATCCCGACGAACTGGTCTTCGCCC--- 20328 | ||||||||||| ||| | ||| |||| ||| || ||||| ||| ||| | | Sbjct 2245 TTTCAGGAAATGGGATCGT-CGGCC-GCGCAGCAGCCTGACGATCTGACCTTTGGGCTTG 2188 Query 20329 -TGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACTTCTTCGACACCGAT 20387 ||| || |||| |||| ||| | |||||| ||||| || | ||||| ||||||||| Sbjct 2187 TTGCCCAGGGCC-GCAA--CCAGAC-CTGCTATGACGGCCAGTATTTCTTTGACACCGAT 2132 Query 20388 CACCC 20392 ||||| Sbjct 2131 CACCC 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116689891573872