Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_030925.1 Length=138081 Score E Sequences producing significant alignments: (Bits) Value seq14098 82.4 7e-11 >seq14098 Length=52687 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 46628 AGCATAGCTAGCTATATTGAAGGGTACACCTAAGAAAAAATCTGACGATCTCTGATATAA 46687 |||||||||||| ||||| || || | ||||| || | ||| | ||||| || || | Sbjct 22277 AGCATAGCTAGCAATATTAAAAGGCAGTCCTAAAAACACATCACAGGATCTTTGGTAAAG 22218 Query 46688 CTTACAGGATAGGGTGCCGTTATCTACATAGAACTGGAACATAGTGTGGCAACTTGGTAA 46747 || ||| || | || || ||||||| || ||||||| | || || | ||| Sbjct 22217 CTGACAAGACAATTGTCCATTTGCTACATAAAATTGGAACAAGGCATGACAGGGAGATAA 22158 Query 46748 AGCTATTTCATCTAGTACACTAGGATTCCACGCTGTTACAAGAAGTCTCCTAGAATTTGG 46807 ||| || ||||||| | ||| | ||||| || | |||| | ||| ||||||| ||| Sbjct 22157 AGCCATATCATCTAATTCACCAACGTTCCAAGCGTTAACAATCATTCTTCTAGAATCTGG 22098 Query 46808 GTTAGACTTAATCTGTTCTA 46827 | || ||||| || |||| Sbjct 22097 GGTATTTTTAATTTGCTCTA 22078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440137566349760