Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq287714 114 2e-20 >seq287714 Length=1605 Score = 114 bits (126), Expect = 2e-20 Identities = 181/253 (72%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 ||||||||||| || ||||| | ||| | || ||||| |||||||| || | || || Sbjct 759 GACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCT--AA 816 Query 99263 G--AAGGCTTTCCGCTGGTA--ACGACTAAGCGCTGTCACATGCGTTCGATTATTCACGA 99318 | |||| |||| ||| || ||||||||| |||| | ||||| |||||| ||| Sbjct 817 GTAAAGGTTTTC--CTGTTACCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGA 874 Query 99319 ACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTAAC 99378 |||| | ||||| || || | || ||||| |||| || | ||||| || || | Sbjct 875 ACTGTTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTC 934 Query 99379 TATTTGGGACGAAT-GGAAGAACAAAGATGGCGACCTCGGACCGGTATACGGTAAACAGT 99437 ||||||||| |||| || ||| ||| | || || || || || || || || | || | Sbjct 935 TATTTGGGATGAATGGGCAGATGAAA-ACGGTGATCTTGGTCCTGTTTATGGGTATCAAT 993 Query 99438 GGCGGTCTTGGCC 99450 ||||||||||||| Sbjct 994 GGCGGTCTTGGCC 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713879212827200