Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq28030 201 2e-46 seq244135 98.7 1e-15 >seq28030 Length=5412 Score = 201 bits (222), Expect = 2e-46 Identities = 613/936 (65%), Gaps = 26/936 (3%) Strand=Plus/Plus Query 47794 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTT 47850 |||| ||||| ||||||| | ||| | | ||||| | ||||| || || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 47851 TTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 47910 |||||||||| ||||| ||||| || || || || || || |||| || ||||||| Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 47911 CCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCA 47970 ||||||| ||||| || || | ||| || || || | | | ||| || | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 47971 GTCTATCTGCAACGAATTCTATATATCTTTTCATCATT---TCACAATTCATTCCTATAA 48027 ||| ||| || || |||| || || | || ||| |||||||||||||| | | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCC---ACTA 48084 | || || |||||||| || || ||||| ||||| | || ||||| || | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 || || || | ||| | || || || || | |||| | ||||| | || | Sbjct 1488 TTTCCG-TGAT-CCGCT-CCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGG 1544 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||| || ||||| ||||| || | | ||| | ||||||||| || ||||| || | Sbjct 1545 CAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAG 1604 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||| |||||||| || || ||||| || || | || || || || || ||||| || | Sbjct 1605 GCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCC 1664 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT---GTGTATCC 48321 |||| ||||||||||| || | | || |||||| | || | | || ||| Sbjct 1665 CTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCC 1724 Query 48322 ACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 48381 || ||| |||||| |||||||||| | | | ||| | | || | || ||||||| Sbjct 1725 ACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGA 1784 Query 48382 GAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTA--AAAGACTATACATTTC 48439 | ||||| | |||| || | || || || || | || || |||||||| Sbjct 1785 GGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGA--GTACATTTC 1842 Query 48440 GGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTG 48499 |||||||| ||||| || || | |||||| || || || |||| |||||| || | || Sbjct 1843 AGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTG 1902 Query 48500 TACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAA 48559 ||||| | || || || | | |||||||| || ||||| ||| ||||| || Sbjct 1903 GACCTCAGCGGTGAAACGCTCGACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGAA 1962 Query 48560 AAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCA---GTTTATTCCAGTC 48616 ||| || | ||||| || ||||| || | | | ||| | | | ||| || Sbjct 1963 AAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAATC 2022 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | |||| || | ||| || ||||| | ||||| || || | |||||||| Sbjct 2023 TAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTTT 2082 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAA 48712 ||||| ||||| || || |||||||| |||||| Sbjct 2083 GTACATGTTCCAGATGTCTGGGTATTGGA-TGGGAA 2117 >seq244135 Length=507 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 77129 AAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTC 77188 ||||||||| || | ||| | ||| || ||||||||| |||||| || || | || ||| Sbjct 265 AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTCAAAAGCTTC 206 Query 77189 ATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||| ||||| ||||| || | |||||||| || ||||||||||| || ||||| Sbjct 205 ATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAATAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692162643370240