Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq28030 233 3e-56 seq285389 98.7 1e-15 seq244135 89.7 7e-13 >seq28030 Length=5412 Score = 233 bits (258), Expect = 3e-56 Identities = 621/936 (66%), Gaps = 27/936 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| |||||| ||||||| | ||| | | ||||| | |||||| || || | Sbjct 1191 TTTAGAAGTCGGCATCTAACGTAAATTTACGTTCTTCGGGCTTTGACATCACACCGGCCT 1250 Query 46340 TTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 46399 |||| ||||| || || ||||| || || || || || || |||| || ||||||| Sbjct 1251 TTTGATATTCTCCCACTTTCTTCTCAAAGAAGTTTGTCTTTCCATCCAGGGAAATATTTT 1310 Query 46400 CCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCA 46459 ||||||| ||||| || || | ||| || || || | | | ||| || | Sbjct 1311 CCATAAAGTCAAAGGGGTTTTCATTATTGTAGATCTTGGGGCAGTCAAGCTCTACAAGGA 1370 Query 46460 GTCTATCTGCAACGAATTCTATATACGTTTTCATCATT---TCACAATTCATTCCTATGA 46516 ||| ||| || || |||| || ||| | || ||| |||||||||||||| | | Sbjct 1371 GTCGATCCGCGACAAATTTGATGTAC---TGCACCATGGAATCACAATTCATTCCGAGCA 1427 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGAT--A 46573 | || || |||||||| || || ||||| || || | || ||||| ||| | Sbjct 1428 TTCGCACGGGAAGAGCCTCTGTGAGGAACTCGCTCTCGATCGCAACGGCATCTCGAACGA 1487 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 || || || | | | || || || || | |||| | ||||| | || | Sbjct 1488 TTTCCG-TGATCCGCT--CCACAGAGGGCTTATTAGCGAGATGTCTGAACATGAGGCAGG 1544 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||| || ||||| ||||| || | | ||| | ||||||||| || |||||||||| Sbjct 1545 CAAAGTCTGTGTGAAGCCCTTCGTCACGAGAAATGAGTTCGTTAGAGAACGTGAGCCCAG 1604 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| ||||||||||| || ||||| || || | || || || || || ||||| || | Sbjct 1605 GCATGAGTCCACGCTTCTTCAGCCAGAAAATGGAAGCAAAGGACCCGGAGAAGAAAATCC 1664 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA---TGAATCC 46810 |||| || ||||| || || | | || |||||| | ||| || || ||| Sbjct 1665 CTTCCACGGCCGCAAAAGCTATGATTCGCTCTCCAAAGGAAGCAGAGGTAGACTGCGTCC 1724 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 || ||||||||||| ||||||| || | | | ||| | | || | || ||||||| Sbjct 1725 ACTTTTGAGCCCAAGCAGCCTTCTTTTGAATAGCAGGGAAGTTGTCCAGGGCGTTAAAGA 1784 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTA--AAAGACTATACATTTC 46928 | ||||| || |||| || | ||| || || || | || || |||||||| Sbjct 1785 GGCGACCCTTTTCCTCTTTATCCTTGATATAGGTGTCAATGAGTAATGA--GTACATTTC 1842 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTG 46988 || ||||||||||| || || | |||||| || || || |||| |||||||||| || Sbjct 1843 AGAGTGAATGTTTTCGATGGCGACCTGAAAGCCATAGAAGCATCGCGCTTCAGTAACTTG 1902 Query 46989 TACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGCAA 47047 ||||| | || || || ||| | |||||||| || ||||| ||| ||||| | Sbjct 1903 GACCTCAGCGGTGAAACGCTC-GACGATGTTCTCATTAACGATTCCGTCAGATGCAGCGA 1961 Query 47048 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCA---GTTTATTCCAGT 47104 |||| || | ||||| || ||||| || ||| | ||| | | | ||| | Sbjct 1962 AAAAGGCAAGGACATGAGATATGAAATAACGCTCTTCGTCATTCAGACGCTCTTCCCAAT 2021 Query 47105 CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTT 47164 | | |||| || | ||| || ||||| | |||||||| || | ||||||| Sbjct 2022 CTAGGGTATCCTTGCTGAGATCCACCTCTTCGACCGTCCAGAAGCTGGCAACGGCTTTTT 2081 Query 47165 TATACATATTCCATATATCACGATATTGGATCGGAA 47200 | ||||| ||||| || || | |||||||| |||| Sbjct 2082 TGTACATGTTCCAGATGTCTGGGTATTGGATGGGAA 2117 >seq285389 Length=790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 ||||| |||||||||||| || | || || || ||||| ||||| |||| | | Sbjct 579 ACTCCAGCTTTTTGGTATTCTGACACTCTCTTTTCAAAGAAATTTGTTTTACCTTGAAGT 638 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 ||||| | |||||||| ||||| |||||||||||||| | ||||| || |||| Sbjct 639 GATATCATATCCATAAAGTCAAAAGGATTAGTAACATTGAATTCTTTTTCGCATTCTAAC 698 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | |||||||| | ||||| |||| ||| | |||||| || ||||||| Sbjct 699 TCAACTAAGAGTCTATCAGTTACGAACTCTAAATATTGTGTCATCAGATCTGAATTCATA 758 Query 46510 CCTATGAGTTTGACCGGTAGAG 46531 || || | | |||||||||| Sbjct 759 CCAATTAAACTTACCGGTAGAG 780 >seq244135 Length=507 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 75715 AACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTC 75774 |||||| ||||||||| || | ||| | || || ||||||||| |||||| || || Sbjct 271 AACAAT---AAATTCTCCTGAAAGTACACGACGGGTATAAATATTAGAGGTATACGGCTC 215 Query 75775 CACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAA 75834 | || |||||| ||||| ||||| || | || ||||| || ||||||||||| || || Sbjct 214 AAAAGCTTCATTATTTCCTAAAATCTGTGATGTAGAAGCTGTAGGCATAGGTGCTACTAA 155 Query 75835 TAA 75837 ||| Sbjct 154 TAA 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710362346565120