Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq14098 131 2e-25 seq287714 120 4e-22 >seq14098 Length=52687 Score = 131 bits (144), Expect = 2e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 99555 TTTGGGCATCAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGC 99614 ||||| ||||||||||| ||| |||| | ||||| |||||| | | || ||||| Sbjct 21819 TTTGGTCATCAAATGCGATTTGATTTAACAGAAGGATTTCCTTTATTAACAACTAAAAAA 21878 Query 99615 TGTCACCTCCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACC 99674 ||| | | |||||||||| | ||||| |||||||| ||||||| ||||| |||||| Sbjct 21879 CTTCATTTGCATTCTATTATTTACGAACTACTTTGGTTTTTGAAAGGTGATACTAATACC 21938 Query 99675 CAGTACCTGAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGAC 99734 || || ||| | || || || | ||| ||| |||| |||| | || || ||||| Sbjct 21939 GCTTATCTAAAAAAGAATGGGGTTAGTATTTGGGATGAATGGGCTGATGATAAGGGTGAT 21998 Query 99735 TTAGGACCGGTATACGGAAAGCAGTGG 99761 ||||| |||||||| || ||||| ||| Sbjct 21999 TTAGGTCCGGTATATGGTAAGCAATGG 22025 >seq287714 Length=1605 Score = 120 bits (132), Expect = 4e-22 Identities = 177/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 99522 GGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTG 99581 || |||||||| ||||| ||||| ||| | ||||||||||| ||||| ||| | | Sbjct 756 GGTGACCGTACGGGCACAGGTACACGTTCTGTCTTTGGGCATCAGATGCGGTTTGACCTA 815 Query 99582 GCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAA 99641 | ||||||||||| | ||| |||||| |||||| |||||||||||| ||| Sbjct 816 AGTAAAGGTTTTCCTGTTACCACGACTAAGAAACTTCACCTTCGTTCTATTATTATCGAA 875 Query 99642 CTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACT 99701 || | ||||| || || | || ||| | | || | ||||||||||| || Sbjct 876 CTGTTATGGTTTTTGCGTGGTGGAACGAATGTTAAATGGTTGCAGGATAACGGCGTTTCT 935 Query 99702 ATCTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGG 99761 || ||| |||| |||| | | || |||||||| | || || || || || | || ||| Sbjct 936 ATTTGGGATGAATGGGCAGATGAAAACGGTGATCTTGGTCCTGTTTATGGGTATCAATGG 995 Query 99762 CGGTCTTGGCC 99772 ||||||||||| Sbjct 996 CGGTCTTGGCC 1006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731626155360960