Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq218392 80.6 7e-11 seq16683 80.6 7e-11 >seq218392 Length=1906 Score = 80.6 bits (88), Expect = 7e-11 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 25273 TGGCGACCCCACCAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCC 25332 |||||| |||| ||||| ||||| ||| |||| | ||||||||||| | ||||||||| Sbjct 308 TGGCGATCCCATCAGGACTCGAAACTGAAACCCCCTGCTTAGAAGGCAGGTGCTCTATCC 249 Query 25333 GGTTGAGCTATGGGGCC 25349 ||||||||||||| || Sbjct 248 AGTTGAGCTATGGGACC 232 >seq16683 Length=10350 Score = 80.6 bits (88), Expect = 7e-11 Identities = 182/269 (68%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 26932 AGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCAGACCGCCTTC 26991 ||| |||||||||||||| ||||| || || ||||||||| ||| || | || ||||| Sbjct 234 AGTTGTGTAGCGCTCAACACCTTGTTGGTCTGTCCATTTATCGGTACGAATACTTCCTTC 293 Query 26992 AATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTTGCCGAA 27051 | | | || | ||| ||||| | ||||| || |||||| || | ||| || || Sbjct 294 TACGTAAACTTGGCTTCCTTTTTTTAAGTATTGCCCCATGATTTCAGCTAACTTACCAAA 353 Query 27052 GATGACAACGCGGTGCCATTCCGTCTGCTCTTTTGGTTCGCCTGTGGCCTTATCTTTCCA 27111 | | | || ||||| || || |||||| |||| || ||| || || ||||| Sbjct 354 GGCTTCTATACGATGCCACTCTGTACGCTCTTGGGGTTGTCCAGTGTTTTTGTCATTCCA 413 Query 27112 CTTTTCGGTTGTGGCAATGCTGAGAT--TGGCAACTGC---GCCACCTGACGGCATGTAG 27166 |||| | || |||| | || || || ||| || |||| || ||||| || Sbjct 414 TGTTTCACTAGTTGCAA--CAGATATAGAGGTAACGGCAGTGCCA-TTG--GGCATATAA 468 Query 27167 CGCACTTCTGGATCGTTGCCTAAATTACC 27195 || |||||||| ||| ||||| || || Sbjct 469 CGTGTTTCTGGATTGTTACCTAAGTTGCC 497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133556684952960