Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caligus_20rogercresseyi_20[genbank_20GCA_5F001005385.1_202015-05-08] 288,616 sequences; 398,147,594 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq277387 468 1e-127 seq213038 325 1e-84 seq154867 324 3e-84 seq83801 105 2e-18 >seq277387 Length=1334 Score = 468 bits (518), Expect = 1e-127 Identities = 647/901 (72%), Gaps = 26/901 (3%) Strand=Plus/Plus Query 15338 CCGCATCACCGCGCTGCCGGCCAACCCCGACACGGCGCGGGGGTTCAGTGCCAATGTGAT 15397 |||| |||| || ||||| || ||||| || || || || || || ||||||||| | Sbjct 16 CCGCGTCACAGCACTGCCCGCAAACCCTGATACAGCACGCGGCTTTTCCGCCAATGTGGT 75 Query 15398 CCTCGACGAATTCGCCTTTCACGCCAAGTCGCGCGAGATCTGGGCGGCGCTCTTCCCGGT 15457 || ||||| ||||| |||||| || |||| || ||| ||||||||||||| || Sbjct 76 GCTAGACGAGTTCGCGTTTCACCAGAATAGCCGCGCCATTTGGTCGGCGCTCTTCCCCGT 135 Query 15458 CGTGTCCAAGGGCGATCAGAAGCTGCGGGTGATCAGCACGCCCAACGGCAAGGGCAACAA 15517 | | || |||||| |||| ||||||||||||||| || ||||| |||||||||||||| Sbjct 136 CATCTCGAAGGGCAATCAAAAGCTGCGGGTGATCTCGACACCCAATGGCAAGGGCAACAA 195 Query 15518 GTTCTTCGAGCTGATGACGGCCGAGGACAGTGTCTGGTCGCGCCATGTGGTCGATATCTA 15577 ||||| ||||||||||| | ||||| || | || ||||| Sbjct 196 GTTCTATGAGCTGATGACTGGTGAGGA-------TGAT------ATTTGGTCNNNNN--- 239 Query 15578 CGAGGCCGTGCGCCAGGGCTGCCCGCGCGATGTGGACATGCTGCGCGCCGGGATCGCGGA 15637 || ||| || ||||| |||||| |||| || ||||||||| || || || Sbjct 240 ----GCGGTGGCGCAAGGCTGTCCGCGCAATGTAGATGAGCTGCGCGCTGGTATGAATGA 295 Query 15638 CGAGGATGCCTGGGCGCAGGAATACGAGCTGAAATGGCTGGATGCCGCCAGCGCCTGGCT 15697 |||||||||||||||||||||||| |||||||||||||| || | |||||||||||| | Sbjct 296 CGAGGATGCCTGGGCGCAGGAATATGAGCTGAAATGGCTCGACGGGGCCAGCGCCTGGAT 355 Query 15698 CGATTACGACCTGATCTCCGCCTGCGAACGCGAGGAGGCCGGCAAGCCAGAGCTTTACCA 15757 ||||| || |||||||| ||||||| |||| || | || || || || Sbjct 356 GGATTATGATCTGATCTCATCCTGCGAGGATCCTCAGGCGGGAATCCCGTCACTCTATCA 415 Query 15758 GGGCGGCCCCTGCTTCGTGGGGGTCGACATTGCGGCGCGCAACGACCTGTTCGTGATCTG 15817 ||||||| ||||| ||||| || || || || |||||||| ||||| || |||||||| Sbjct 416 GGGCGGCATGTGCTTTGTGGGTGTTGATATCGCTGCGCGCAATGACCTCTTTGTGATCTG 475 Query 15818 GGTGGTGGAAGAGACGGGCGGCCGGCTGGTCACGCGCGAGGTGATTGCGCAAAAGCGGAT 15877 |||| ||| | || |||| | || |||| |||||| | || || | || | Sbjct 476 GGTGAAGGAGCTGGCGAATGGCCAGTTGATCACCCGCGAGATTATCGCAGAGCGCCGTGT 535 Query 15878 CACATTCGCCGAACAGGACGCGCTGCTGGACGATGTCTTCCGCCGTTATCGCGTGGTGCG 15937 || || ||| || |||| ||| || ||||| || ||||| || ||||| || || Sbjct 536 AACCTTTGCCCGCCAAGACGAGCTTGACGATGATGTGTTTCGCCGGTACCGCGTTGTCCG 595 Query 15938 C-GCGGGTATGGACCAGACCGGCATGGGCGAAAAACCGGTGGAGGACGCCAAGCGCCGCC 15996 | || || |||||||| || ||||||||||||||||| || ||||| ||||||||||| | Sbjct 596 CTGCCGG-ATGGACCAAACAGGCATGGGCGAAAAACCTGTTGAGGATGCCAAGCGCCGTC 654 Query 15997 ATGGCGCGGCCCGCATCGACGGCGTGCTGTTCAGTGCGGGTTCAAAGCTCGATCTCGCCA 16056 | |||| || ||| | || ||||| | ||||| | || || |||||||| | || | Sbjct 655 ACGGCGAGGATCGCGTTGAACGCGTGATCTTCAGCGGGGCGTCCAAGCTCGACATGGCAA 714 Query 16057 CCGCGCTGAAGGAGAAGATGGAGGATC-GCGAGATGTTGATCCCCGCGGGCGACCCGGTG 16115 | | || || ||| | | |||||| ||| | | | || || ||||| || || Sbjct 715 CATCACTTAAAGAGGCGTTTCAGGATCGGCGTG-CGCTTATTCCGGCGGGTGATCCCAAA 773 Query 16116 CTGCGCGCCGATCTGCACGCGATATCCAGCCG-CACCGGGCCGACCGGCATCCGCCGGCT 16174 ||||||||||||||||| |||| | | | || || || ||||| | |||||| || Sbjct 774 TTGCGCGCCGATCTGCACTCGAT-CAAATCTGTGACAGGCCCAACCGGAAACCGCCGCCT 832 Query 16175 GGTCGCCGATGGCGAAACCGATGGCCATGCCGACAGGTTCTGGGCCGCGGCGCTGGCGGT 16234 ||| ||||||| |||||||||||||| || ||| | |||||||| | |||||||| || Sbjct 833 TGTCTCCGATGGTGAAACCGATGGCCACGCGGACCGCTTCTGGGCGGGTGCGCTGGCTGT 892 Query 16235 G 16235 | Sbjct 893 G 893 >seq213038 Length=569 Score = 325 bits (360), Expect = 1e-84 Identities = 419/577 (73%), Gaps = 9/577 (2%) Strand=Plus/Plus Query 5569 CCCCCGATGATCCGCAGCAAGGCGTTGCTGCATGCGATGGAGGCGGTGAACGCCGACTGC 5628 || |||||||||||| |||| | |||||||||||||| |||||||||||||| Sbjct 2 CCGCCGATGATCCGCTCCAAGCTTGAGATGCATGCGATGGAGCATGTGAACGCCGACTGT 61 Query 5629 CACCGCTTCGATGTGTTCGTGCTGTGGCCGGGGTCGGACCGGCCCGAGCGGCCGCAGATC 5688 ||| |||||||| ||| ||| | | || | | || ||| ||||| Sbjct 62 CACAAGTTCGATGTCTTCACCGAATGG--GAAGATGGCTATGTC-GATCGGTGCCAGATT 118 Query 5689 GTGGCCTATCAGGACCTCTATTCGGGCAAGATCCTCAGCTGGCGGATCGACCATACGCCG 5748 ||||| | |||||| |||| || |||||| | || |||||||| || ||||| ||||| Sbjct 119 GTGGCGTTTCAGGATATCTACTCCGGCAAGGTGCTGAGCTGGCGCATTGACCACACGCCC 178 Query 5749 AACGAGGTGGCCGTGATGGCAGCCTTTGGCGAGATGGTCGAAACCTATGGCATCCCGAAG 5808 || |||| ||| || ||| | |||||||| |||||||| |||| || |||||||| || Sbjct 179 AATGAGGCGGCGGTTATGTCTGCCTTTGGGGAGATGGTTGAAAGCTGGGGCATCCCTGAG 238 Query 5809 CACTGCACCTTCGACAACGGGCGGGAATTCGCGGCCAAGTGGCTGTCAGGCGGGGCCAAG 5868 || ||||||||||||||||| || |||||||| ||||| |||||| ||||||| ||| Sbjct 239 CATTGCACCTTCGACAACGGTCGCGAATTCGCTGCCAAATGGCTGAGTGGCGGGGTCAAA 298 Query 5869 ACGCGCTATCGCGGCAAGATCCGCGACGATGACCCGATGGGTGTTCTGCCGCTTTTGAAC 5928 || |||||||||||||||||||| || ||||| || ||||| || |||| || | | Sbjct 299 ACCCGCTATCGCGGCAAGATCCGTGATGATGATCCAATGGGCGTATTGCCCCTGCTTGGC 358 Query 5929 ATCAAGATCCATTGGGCGAAGCCGGCCCATGGGCAGGCCAAGCCCATCGAGCGGGCGTTC 5988 || | ||||| ||||| | || | ||||| |||||||| || | ||| || ||||| Sbjct 359 ATTCAAATCCACTGGGCCACACCAGGGCATGGTCAGGCCAAACCTGTTGAGAGGACGTTC 418 Query 5989 CGCGATTTTGCCAGCGACATTTCGAAGGATATCCGGTTCCAGGGGGCCTATACCGGCAAC 6048 ||||| || | ||| | ||||| ||||| ||| || |||||| ||||||| Sbjct 419 CGCGACTT------NNATATTGCCAAGGACATCCGTTTCGCTGGAGCCTATGTCGGCAAC 472 Query 6049 CGGCCGGATGCCAAGCCGGAGGACTACGCGACGCGGGCCATCCCGCTGGACGATTTCGTG 6108 || || || ||||| || ||| ||||| ||||||| | ||| | | || || | Sbjct 473 CGTCCCGACGCCAAACCTGAGAACTACAAATCGCGGGCGGTGCCGATCAAGGACTTTATC 532 Query 6109 CGCGTGGTGGGCGAGCGCATCGCCGAACACAATGCGC 6145 || || || | ||||| ||| |||||||| |||| Sbjct 533 CGTGTCGTTGATGAGCGGATCAAGGAACACAACGCGC 569 >seq154867 Length=1673 Score = 324 bits (358), Expect = 3e-84 Identities = 540/772 (70%), Gaps = 14/772 (2%) Strand=Plus/Plus Query 7002 CGGGCCAAAAGGCCCACGGACGGGAGCGAAAATGACACAAGAACACAGG-CTTTACAACT 7060 ||||| |||||||| ||| |||| ||||||||| | || || || ||||||||| Sbjct 275 CGGGCGGCAAGGCCCAGAGACAGGAGTTAAAATGACAGA-GACAACCGGACTTTACAACA 333 Query 7061 CTGTTGCGCCGCTGAGGAACGTCTCGGCGCTCGTGACACTGATCGAGAAGGTGCGCGACC 7120 ||||| ||||| ||||| || | || || || || |||||| | ||| || | Sbjct 334 GCGTTGCCCCGCTCAGGAATGTGACCGCCCTGGTCACCCTGATCCACCGGGTCAACGGAC 393 Query 7121 GCGCGCCCGGTTTGCCGGGGATGGCGACATTCTCGGGCTATTCCGGCTATGGCAAGACGA 7180 || | || ||||| || ||||| || |||| ||||||||||||| |||||||||| Sbjct 394 GCACCTTGGGGTTGCCTGGCATGGCCACGTTCTATGGCTATTCCGGCTTCGGCAAGACGA 453 Query 7181 CGGCGGCCGTCTATGCCGCGAACTGCTTTGACGCGCTGCAGGTGCAGGTCAAGGAAAGCT 7240 | || || |||||||| || ||| || |||| || ||||| |||||||| || |||| Sbjct 454 CAGCAGCGGTCTATGCGGCCAACAAATTCAACGCCCTTCAGGTTCAGGTCAAAGAGAGCT 513 Query 7241 GGACCGCCCGGAAGTTCTGCCAGTCGATTCTGAGCGAGATGGGCATCCTGCCCGCCAAGA 7300 |||||| | ||| |||| ||| |||| || |||||||| || | ||| ||||||| Sbjct 514 GGACCGGCAAGAAACTCTGTCAGGCGATCCTTGGCGAGATGAGCCTGACGCCAGCCAAGA 573 Query 7301 CCATCGCCGACATGATCGACCAGATCGCGCAGGAACTGGCGTTGTCGGACCGCGTGCTGA 7360 | ||||| |||||| |||||||||| || ||||||||| ||| || || || ||| Sbjct 574 CGATCGCGGACATGGTCGACCAGATTGCCCAGGAACTGATGTTCTCTGAGAAGGTACTGC 633 Query 7361 TCGTCGATGACGCGCAATACCTGATCAAGCGGTCGATGATCGGCCATGTCCGTGACATCT 7420 | || ||||| ||||| || || | ||||| || ||||| | | || ||||| | Sbjct 634 TGGTGGATGATGCGCAGTATTTGGTGAAGCGCAGCATCATCGGTATTCTGCGCGACATTT 693 Query 7421 ACGAAAGCTCGGGCGCGACCATCATCCTGATCGGCGAGGAGCGCCTGCCGCAGCAGTTGC 7480 | || ||| ||| || ||||||||||||||||| ||| | |||||||| | ||| Sbjct 694 ATGAGAGCAGCGGCAATACAATCATCCTGATCGGCGAAGAGAACTTGCCGCAGGATCTGC 753 Query 7481 AGCAATGGGAAAACATCCATGGCCGGATGTTCGATTGGGTCACGGCCGAGCCCGCCTGCC 7540 | | |||||||||||||| ||||| ||| | |||||||| | || |||||||||| Sbjct 754 AACGCTGGGAAAACATCCACGGCCGCATGCTGGATTGGGTGCCTGCGCTGCCCGCCTGCA 813 Query 7541 TGGACGACGTGGCCCATCTGGCGCGCATCTACTGTGCCGAGGTGACCCT-GTCGGAGGCG 7599 ||| ||| | | ||||| || | | || || | ||||||| || | | | | Sbjct 814 TGGCAGACCTTGATCATCTCGCAGGGCTGTATTGCCCGAAGGTGACGCTCGACCCTGAC- 872 Query 7600 TTTCGCGCCAAGCTGTTGCATGCCTCGGTGCATTCGATCCGGCGGGTCTGCATCAATCTG 7659 ||| | | | | | ||||| |||||| || || || ||||| | || || Sbjct 873 TTTAAGGATCACATCCTCAAGGCCTCCCAGCATTCCATTCGCCGCGTCTGTGTGAACCTC 932 Query 7660 GCAAAGGTGCGGGAATTCGCGCTGACCGCCGGGC-TGGATGCCGTCGATCCCGATAT--- 7715 | |||||| ||||| || | || ||| |||| | || || ||| |||| Sbjct 933 GGCAAGGTGGCTGAATTTGC-CAGAACGCGGGGCGTTGAACAGGTGGAT----ATATCCA 987 Query 7716 -CTGGGGCGACCGGGGCTTTTTCGCCTGCGCGGCGCCCAGGCCGCGGGGGGA 7766 ||||||||| || | || |||||||||||||| |||| || || |||| Sbjct 988 ACTGGGGCGATCGAGAATTCTTCGCCTGCGCGGCTCCCAAACCTAGGAGGGA 1039 >seq83801 Length=1216 Score = 105 bits (116), Expect = 2e-18 Identities = 188/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 9667 TTCGGCCCCGAACTGCAGGTCGCGAAGGAGCTGATCGACGACTGCCTGCTGGAATGGACG 9726 |||||||| || || ||| |||| |||| ||| | ||||| |||||| |||||| | Sbjct 683 TTCGGCCCAGAGCTTCAGATCGCCAAGGCGCTCTTTGACGAATGCCTGACTGAATGGGCT 624 Query 9727 GAAGGCGCGCGCGAGGAACTGCGCGCCGTGATCACCCGCGCTTTCCAGACCGACAAGACC 9786 | | |||||| || ||||| ||| || | || || ||||| ||||||||||| Sbjct 623 GCGGACGCGCGGCCAGAGCTGCGGGCCTTGGTGACGAATGCGTTCCAAACCGACAAGACG 564 Query 9787 GGCCAGGTCAACCGGGCGAACATCTTCATGCTGTTGCGCCTGGAAATCGCCGATGAGCGG 9846 || | ||||||| | |||||| ||||| ||||||| || | || ||| || Sbjct 563 GGGAACATCAACCGCTCTCGCATCTTTATGCTTTTGCGCCAAGACAGCGAGGATCCCCGC 504 Query 9847 TGGC-GCAGCGCGATGGAGGCAATCCGCGATGCAATGCGTGTGGTCGGCACGAAGACGTA 9905 |||| | | || | | || || ||||| || ||||| || |||||| | ||| ||| Sbjct 503 TGGCAGGAAGGCCAACG-TGCCATTCGCGAGGCCATGCGCGTTGTCGGCTCCAAGCGGTA 445 Query 9906 TTTCCGCGGCTACCGGCGCGCGACCCCCGACG 9937 | | ||| | || ||||| || | || |||| Sbjct 444 TGTGCGCTGTTATCGGCGTGCCAGCCATGACG 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123527177451120